Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   AVFI_RS12030 Genome accession   NZ_CP092712
Coordinates   2631748..2632266 (-) Length   172 a.a.
NCBI ID   WP_005421095.1    Uniprot ID   A0AAV3ERG0
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2626748..2637266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS12015 (AVFI_12015) aroB 2628105..2629193 (-) 1089 WP_011262699.1 3-dehydroquinate synthase -
  AVFI_RS12020 (AVFI_12020) aroK 2629230..2629748 (-) 519 WP_005421091.1 shikimate kinase AroK -
  AVFI_RS12025 (AVFI_12025) pilQ 2629973..2631661 (-) 1689 WP_012533907.1 type IV pilus secretin PilQ Machinery gene
  AVFI_RS12030 (AVFI_12030) pilP 2631748..2632266 (-) 519 WP_005421095.1 pilus assembly protein PilP Machinery gene
  AVFI_RS12035 (AVFI_12035) pilO 2632259..2632837 (-) 579 WP_005421098.1 type 4a pilus biogenesis protein PilO Machinery gene
  AVFI_RS12040 (AVFI_12040) - 2632837..2633403 (-) 567 WP_011262703.1 PilN domain-containing protein -
  AVFI_RS12045 (AVFI_12045) pilM 2633388..2634389 (-) 1002 WP_054775331.1 type IV pilus biogenesis protein PilM -
  AVFI_RS12050 (AVFI_12050) - 2634528..2637026 (+) 2499 WP_026029395.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19476.91 Da        Isoelectric Point: 10.6555

>NTDB_id=659797 AVFI_RS12030 WP_005421095.1 2631748..2632266(-) (pilP) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MNSRMFVSAITLMLMVGCKANKDSLDTFYTDAKRSGHKEVEVLANVVPFEVEVYAQSEARSPFVLPKQPERVTQPKKKKT
CWQPKYRKKTGALERYSLRKLRLKGVMGADQDITALIQTPKGSVIKVRKGQYMGTNNGQVVAIKSKQITLKETLPDGMGC
WQQRYVKLALKH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=659797 AVFI_RS12030 WP_005421095.1 2631748..2632266(-) (pilP) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGAATAGTCGGATGTTTGTTTCAGCCATAACCTTGATGTTGATGGTTGGGTGTAAAGCGAATAAGGACTCTCTTGATAC
TTTTTATACTGATGCTAAACGATCAGGACATAAAGAGGTGGAAGTATTAGCTAACGTTGTACCTTTTGAGGTGGAAGTGT
ATGCCCAATCAGAAGCTCGTTCCCCCTTTGTTCTTCCTAAGCAACCTGAGCGAGTAACCCAACCGAAAAAGAAAAAAACG
TGTTGGCAGCCGAAATACAGAAAAAAAACAGGAGCATTAGAGCGATATTCATTGCGTAAGTTACGTTTAAAAGGCGTGAT
GGGAGCAGACCAAGACATTACCGCTCTGATACAAACACCGAAAGGGAGTGTGATTAAAGTTCGCAAAGGGCAGTACATGG
GGACCAATAATGGTCAAGTGGTTGCGATTAAATCAAAACAAATTACGTTGAAAGAAACCCTGCCAGATGGAATGGGATGC
TGGCAACAAAGATATGTAAAACTGGCGTTGAAACATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

49.412

98.837

0.488
  pilP Vibrio campbellii strain DS40M4

42.105

99.419

0.419