Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MKR81_RS02845 Genome accession   NZ_CP092682
Coordinates   579077..580300 (-) Length   407 a.a.
NCBI ID   WP_240305020.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 574077..585300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS02810 (MKR81_02810) rimM 574313..574861 (+) 549 WP_005534055.1 ribosome maturation factor RimM -
  MKR81_RS02815 (MKR81_02815) trmD 574889..575632 (+) 744 WP_005425529.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MKR81_RS02820 (MKR81_02820) rplS 575674..576027 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  MKR81_RS02825 (MKR81_02825) yacG 576495..576695 (-) 201 WP_012128882.1 DNA gyrase inhibitor YacG -
  MKR81_RS02830 (MKR81_02830) zapD 576752..577492 (-) 741 WP_012128881.1 cell division protein ZapD -
  MKR81_RS02835 (MKR81_02835) coaE 577520..578134 (-) 615 WP_012128880.1 dephospho-CoA kinase -
  MKR81_RS02840 (MKR81_02840) pilD 578135..579004 (-) 870 WP_240305019.1 A24 family peptidase Machinery gene
  MKR81_RS02845 (MKR81_02845) pilC 579077..580300 (-) 1224 WP_240305020.1 type II secretion system F family protein Machinery gene
  MKR81_RS02850 (MKR81_02850) pilB 580335..582020 (-) 1686 WP_240305021.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MKR81_RS02855 (MKR81_02855) - 582022..582450 (-) 429 WP_240305022.1 pilin -
  MKR81_RS02860 (MKR81_02860) pilA 582450..582863 (-) 414 WP_045395349.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MKR81_RS02865 (MKR81_02865) nadC 583129..584016 (-) 888 WP_012128875.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MKR81_RS02870 (MKR81_02870) ampD 584109..584660 (+) 552 WP_038891990.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44992.26 Da        Isoelectric Point: 10.3628

>NTDB_id=659664 MKR81_RS02845 WP_240305020.1 579077..580300(-) (pilC) [Vibrio campbellii strain IFL1]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEVEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMYYQLAIEEVYRDTAAG
MPMYIAMRNCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=659664 MKR81_RS02845 WP_240305020.1 579077..580300(-) (pilC) [Vibrio campbellii strain IFL1]
ATGAAAACCATCGCTCCTCAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCAGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACAGAAGTCGAGGTAAGAGAGCGCCTTGATGCTCAGCACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACTATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACACGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGTTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGGCCCTTTATTGGGCTGAGTTTTGTAAGCCTGCTCATTTCCGGC
AAAATTATGTCGCAGCGATCCGATTCATTTCGCCTTTTAGCTGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCAGT
ATTATCCAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGTACTATCAATTAGCAATTGAAGAGGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAAGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAGCCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.263

100

0.993
  pilC Vibrio cholerae strain A1552

73.5

98.28

0.722
  pilC Acinetobacter baylyi ADP1

42.462

97.789

0.415
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.604

99.263

0.393
  pilG Neisseria gonorrhoeae MS11

39.163

99.754

0.391
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383