Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG471_RS39050 Genome accession   NZ_CP108369
Coordinates   9030393..9031415 (-) Length   340 a.a.
NCBI ID   WP_306105656.1    Uniprot ID   A0ABY9IJ51
Organism   Streptomyces sp. NBC_01336     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9025393..9036415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG471_RS39040 (OG471_39065) - 9026266..9028737 (+) 2472 WP_327173319.1 glycoside hydrolase family 3 C-terminal domain-containing protein -
  OG471_RS39045 (OG471_39070) - 9028901..9029992 (-) 1092 WP_327173320.1 lytic polysaccharide monooxygenase -
  OG471_RS39050 (OG471_39075) cytR 9030393..9031415 (-) 1023 WP_306105656.1 LacI family DNA-binding transcriptional regulator Regulator
  OG471_RS39055 (OG471_39080) - 9031909..9033297 (+) 1389 WP_306084238.1 cellulase family glycosylhydrolase -
  OG471_RS39060 (OG471_39085) - 9033365..9034300 (+) 936 WP_327173321.1 helix-turn-helix domain-containing protein -
  OG471_RS39065 (OG471_39090) - 9034246..9035106 (-) 861 WP_327173322.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36848.08 Da        Isoelectric Point: 6.8878

>NTDB_id=659663 OG471_RS39050 WP_306105656.1 9030393..9031415(-) (cytR) [Streptomyces sp. NBC_01336]
MLKRGSGTPTLEEVAALAGVGRGTVSRVINNASGVKASTRRAVQRAIEELDYVPNLAARSLAGRRADAVALVMTKTDWRL
FGAPFFSEVVRAVGDALTEADVQLLLTLVRTDAERQRLVKYVRGGRIDGALLMSVRAEDRLPDMLADAGLPTVLLGRRSD
EERVTYVDADNVGGARAAVAHLARGGRKSIAAITGPPEMYASRCRLRGYREALRDAGLDEVQSLVVQGDFSEVSGRRAMT
GLIERHPEVDGVFASSDSMAAGAVTALHAAGRRVPQDVAVIGFDDFELAEQTEPPLTTVRQPMEEIGRTMVRLLLEEMDQ
PQVAWRHVILRTQLVVRESA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=659663 OG471_RS39050 WP_306105656.1 9030393..9031415(-) (cytR) [Streptomyces sp. NBC_01336]
ATGCTGAAGCGAGGTTCCGGCACACCGACGCTGGAGGAAGTGGCCGCGCTTGCCGGAGTGGGGCGGGGCACGGTCTCCCG
GGTGATCAACAACGCGTCGGGCGTCAAGGCGTCGACACGCCGCGCCGTGCAACGCGCCATCGAGGAACTGGACTACGTCC
CCAACCTGGCCGCGCGCTCACTGGCGGGCCGGCGCGCGGACGCCGTCGCGCTGGTGATGACGAAGACGGACTGGCGGCTG
TTCGGGGCACCGTTCTTCTCGGAGGTCGTACGGGCGGTCGGGGACGCCCTGACCGAGGCGGACGTGCAACTGCTGCTCAC
GCTCGTCCGCACGGACGCGGAGCGGCAGCGGCTCGTGAAGTACGTGCGCGGCGGCCGGATCGACGGGGCTCTGCTCATGT
CCGTACGGGCCGAGGACCGGTTGCCGGACATGCTCGCCGACGCCGGACTGCCCACGGTGCTGCTCGGCAGGCGCTCGGAC
GAGGAACGTGTGACCTATGTGGACGCGGACAACGTGGGTGGCGCAAGGGCCGCGGTCGCCCATCTGGCGCGCGGCGGGCG
GAAATCCATCGCGGCGATCACGGGACCTCCCGAGATGTACGCCTCCCGGTGCAGGCTGCGCGGCTACCGGGAGGCGCTGC
GCGACGCCGGGCTCGACGAGGTCCAGTCCCTGGTCGTACAGGGAGACTTCAGCGAGGTCAGCGGACGGCGGGCGATGACC
GGGCTCATCGAGCGGCACCCGGAGGTCGACGGCGTCTTCGCCTCGTCGGACAGCATGGCCGCCGGGGCGGTTACCGCCCT
GCACGCGGCGGGGCGCCGGGTCCCGCAGGATGTGGCGGTGATCGGCTTCGACGACTTCGAGCTGGCCGAGCAGACCGAAC
CGCCGCTGACGACCGTCCGCCAGCCGATGGAGGAGATCGGCCGGACCATGGTGCGACTGCTGCTGGAGGAGATGGACCAG
CCGCAGGTCGCGTGGCGTCATGTGATCCTGCGGACGCAGCTGGTGGTGCGCGAGTCGGCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.965

100

0.362