Detailed information NTG0659663

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MKR81_RS02840
• Genome accession: NZ_CP092682
• Coordinates: 578135..579004 (-)
• Length: 289 a.a.
• NCBI ID: WP_240305019.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain IFL1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 573135..584004

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MKR81_RS02805 (MKR81_02805)	rpsP	574037..574285 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
MKR81_RS02810 (MKR81_02810)	rimM	574313..574861 (+)	549	WP_005534055.1	ribosome maturation factor RimM	-
MKR81_RS02815 (MKR81_02815)	trmD	574889..575632 (+)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
MKR81_RS02820 (MKR81_02820)	rplS	575674..576027 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
MKR81_RS02825 (MKR81_02825)	yacG	576495..576695 (-)	201	WP_012128882.1	DNA gyrase inhibitor YacG	-
MKR81_RS02830 (MKR81_02830)	zapD	576752..577492 (-)	741	WP_012128881.1	cell division protein ZapD	-
MKR81_RS02835 (MKR81_02835)	coaE	577520..578134 (-)	615	WP_012128880.1	dephospho-CoA kinase	-
MKR81_RS02840 (MKR81_02840)	pilD	578135..579004 (-)	870	WP_240305019.1	A24 family peptidase	Machinery gene
MKR81_RS02845 (MKR81_02845)	pilC	579077..580300 (-)	1224	WP_240305020.1	type II secretion system F family protein	Machinery gene
MKR81_RS02850 (MKR81_02850)	pilB	580335..582020 (-)	1686	WP_240305021.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MKR81_RS02855 (MKR81_02855)	-	582022..582450 (-)	429	WP_240305022.1	pilin	-
MKR81_RS02860 (MKR81_02860)	pilA	582450..582863 (-)	414	WP_045395349.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32537.77 Da
• Isoelectric Point: 7.5422

>NTDB_id=659663 MKR81_RS02840 WP_240305019.1 578135..579004(-) (pilD) [Vibrio campbellii strain IFL1]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWFGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=659663 MKR81_RS02840 WP_240305019.1 578135..579004(-) (pilD) [Vibrio campbellii strain IFL1]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGAACTCCCATTCGTATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTGCTGAAAGGCAAGTGCCACAACTGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
GGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTCCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGTTTGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.27	100	0.983
pilD	Vibrio cholerae strain A1552	75.347	99.654	0.751
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436