Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MKS89_RS00220 Genome accession   NZ_CP092587
Coordinates   50813..51928 (+) Length   371 a.a.
NCBI ID   WP_072963488.1    Uniprot ID   -
Organism   Vibrio gazogenes strain PB1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 45813..56928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS89_RS00200 (MKS89_00200) trkA 46300..47676 (-) 1377 WP_072963452.1 Trk system potassium transporter TrkA -
  MKS89_RS00205 (MKS89_00205) rsmB 47755..49041 (-) 1287 WP_072963485.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  MKS89_RS00210 (MKS89_00210) fmt 49093..50058 (-) 966 WP_072963454.1 methionyl-tRNA formyltransferase -
  MKS89_RS00215 (MKS89_00215) def 50070..50591 (-) 522 WP_072963456.1 peptide deformylase -
  MKS89_RS00220 (MKS89_00220) dprA 50813..51928 (+) 1116 WP_072963488.1 DNA-processing protein DprA Machinery gene
  MKS89_RS00225 (MKS89_00225) - 51934..52407 (+) 474 WP_205409204.1 DUF494 family protein -
  MKS89_RS00230 (MKS89_00230) - 52418..52987 (+) 570 WP_072963461.1 type I DNA topoisomerase -
  MKS89_RS00235 (MKS89_00235) - 53099..54229 (-) 1131 WP_072963463.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  MKS89_RS00240 (MKS89_00240) purE 54235..54720 (-) 486 WP_072963465.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  MKS89_RS00245 (MKS89_00245) - 54937..55494 (+) 558 WP_072963468.1 Sua5/YciO/YrdC/YwlC family protein -
  MKS89_RS00250 (MKS89_00250) hemF 55512..56426 (+) 915 WP_072963471.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40414.62 Da        Isoelectric Point: 7.0987

>NTDB_id=659168 MKS89_RS00220 WP_072963488.1 50813..51928(+) (dprA) [Vibrio gazogenes strain PB1]
MWIKLCLTPRLGTQSLLKLLGKASLESLSHYSEKEWLALGLSPAQVSYLLSGAANQVAEDCLEWQVRGKYRHIVTYFSPD
YPALLKEIPSPPPLLFVQGEISLLSVPQIAIVGSRHASMQGLQDAWHFANGFAQHQVAVTSGLALGIDGQAHMGAIEGGG
KTIAVLGAGLERIYPARHRGLAERILEQQSGVLVSEFCPSTPPKSMNFPRRNRIISGLSLGVLVIEAAEKSGSLITARYA
VEQNRDVFVIPGAIHQHGYRGSNALIRDGACLVQNIEQVLSEVGTLSAWVKKEEKREEKIQQNELFPPLIDDEELPFAEV
LANVGVKATPVDILATRTHIPVHEVMRQLLELELSGHVIAVAGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=659168 MKS89_RS00220 WP_072963488.1 50813..51928(+) (dprA) [Vibrio gazogenes strain PB1]
ATGTGGATAAAACTCTGCCTGACACCTCGTCTGGGAACGCAGTCGTTGTTAAAGCTACTCGGCAAAGCATCGCTTGAGTC
GTTGAGCCATTATTCTGAAAAAGAGTGGCTTGCTTTGGGACTCTCGCCCGCGCAGGTCTCTTATCTGCTCTCCGGAGCTG
CGAATCAAGTGGCCGAAGATTGCCTCGAATGGCAAGTGCGTGGCAAGTATCGTCATATCGTGACTTATTTTTCACCGGAT
TATCCGGCACTATTGAAAGAAATTCCGTCTCCGCCACCATTGTTGTTTGTGCAGGGAGAGATTTCGCTGCTATCCGTGCC
ACAGATAGCCATTGTCGGCAGCCGCCATGCCAGTATGCAAGGATTGCAAGATGCGTGGCATTTTGCGAATGGATTTGCTC
AGCATCAAGTAGCAGTGACCAGTGGGTTAGCGCTAGGGATTGATGGTCAGGCTCATATGGGAGCAATCGAAGGTGGCGGT
AAAACCATTGCTGTTTTAGGGGCGGGCTTAGAGCGTATCTATCCGGCCCGGCATCGTGGGCTGGCTGAGCGGATACTTGA
ACAACAGTCCGGTGTTCTGGTGTCAGAATTTTGTCCTTCAACACCACCGAAATCAATGAACTTTCCTCGCCGTAACCGAA
TTATCAGTGGGTTATCTCTGGGAGTGCTGGTGATTGAAGCTGCGGAAAAGAGTGGGTCATTGATTACCGCAAGATATGCT
GTTGAGCAAAATCGGGATGTTTTTGTGATCCCGGGCGCGATTCATCAGCACGGTTATCGGGGAAGTAATGCACTAATCCG
TGATGGCGCTTGCTTAGTTCAGAATATTGAACAGGTACTCTCTGAAGTTGGTACGTTATCTGCTTGGGTAAAGAAAGAAG
AGAAGCGAGAAGAGAAAATTCAGCAAAATGAGCTTTTTCCGCCATTAATTGACGACGAAGAATTGCCATTTGCTGAAGTG
TTAGCTAACGTAGGGGTAAAAGCGACGCCAGTTGATATTCTTGCAACGCGAACCCATATACCAGTTCATGAAGTGATGAG
ACAGCTACTAGAGCTGGAATTATCCGGGCACGTGATTGCAGTTGCTGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-274)

DprA winged helix domain (DprA_WH)

(307-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

56.757

99.73

0.566
  dprA Vibrio campbellii strain DS40M4

56.604

100

0.566
  dprA Legionella pneumophila strain ERS1305867

44.011

96.765

0.426
  dprA Glaesserella parasuis strain SC1401

41.823

100

0.42
  dprA Haemophilus influenzae Rd KW20

42.136

90.836

0.383
  dprA Neisseria meningitidis strain C311

35.806

100

0.377
  dprA Neisseria meningitidis MC58

35.806

100

0.377
  dprA Neisseria gonorrhoeae MS11

34.586

100

0.372
  dprA Neisseria gonorrhoeae strain FA1090

34.336

100

0.369
  dprA Acinetobacter baumannii D1279779

40.299

90.296

0.364
  dprA Acinetobacter baumannii strain A118

40

90.296

0.361