Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MJX77_RS03690 Genome accession   NZ_CP092454
Coordinates   780915..782141 (+) Length   408 a.a.
NCBI ID   WP_252060577.1    Uniprot ID   -
Organism   Acinetobacter sp. AHP123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 775915..787141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS03655 rimP 776583..777110 (-) 528 WP_004795010.1 ribosome maturation factor RimP -
  MJX77_RS03675 secG 777747..778076 (-) 330 WP_004795012.1 preprotein translocase subunit SecG -
  MJX77_RS03680 tpiA 778089..778883 (-) 795 WP_005301831.1 triose-phosphate isomerase -
  MJX77_RS03685 pilB 779175..780887 (+) 1713 WP_005301829.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MJX77_RS03690 pilC 780915..782141 (+) 1227 WP_252060577.1 type II secretion system F family protein Machinery gene
  MJX77_RS19320 pilD 782141..783001 (+) 861 WP_286089233.1 A24 family peptidase Machinery gene
  MJX77_RS03705 coaE 783003..783599 (+) 597 WP_151821432.1 dephospho-CoA kinase -
  MJX77_RS03710 - 783596..784510 (-) 915 WP_252060578.1 DMT family transporter -
  MJX77_RS03715 rlmB 784546..785295 (-) 750 WP_151826698.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MJX77_RS03720 - 785398..785724 (-) 327 WP_004795031.1 pyrimidine/purine nucleoside phosphorylase -
  MJX77_RS03725 - 785801..787111 (-) 1311 WP_252060579.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44960.42 Da        Isoelectric Point: 9.9566

>NTDB_id=657710 MJX77_RS03690 WP_252060577.1 780915..782141(+) (pilC) [Acinetobacter sp. AHP123]
MTVKKAQLMPTFAYDGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFILIIVIGAIIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=657710 MJX77_RS03690 WP_252060577.1 780915..782141(+) (pilC) [Acinetobacter sp. AHP123]
ATGACTGTCAAAAAGGCACAATTGATGCCGACTTTTGCTTATGATGGGGTTGACCGTAAAGGCGTAAAAATTAAGGGGGA
ACTTCCGGCTAAAAATATGGCTTTAGCCAAAGTCACCCTACGCAAGCAAGGTGTAACTGTTCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTTAAGAAAAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACT
ATGATGAAAGCTGGTGTCCCACTGGTACAAGGTTTTGAAATTGTGGCAGAAGGTCTAGAAAACCCAGCTATGCGCGAGGT
GGTACTCGGTATTAAAGGTGAAGTTGAAGGTGGTAGTACTTTTGCGTCAGCTCTAAGAAAGTATCCTCAGCACTTCGATA
AACTGTTTTGCTCTCTTGTAGAGTCTGGCGAACAGTCTGGCGCGCTTGAAACCATGCTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAGAAAATTAAGAAAGCTATGAAATATCCAGCAACGGTTATTGTGGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCCGTATTCCAAGATCTGTTTTCTTCCTTTGGCGCAGATCTACCTGCTTTTA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTCTGATTATTGTGATCGGTGCAATCATTGCC
GCATTTCTGGAAGCTAAAAAGCGCAGTAAAAAATTCCGTGATGGTTTAGACAAACTTGCCCTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTACAGCCGTACTTTAGCAACAACTTTTGCAGCTGGTGTTCCTCTCATCG
ATGCGCTTGAATCAACGGCTGGTGCAACTAACAATGTCATTTACGAACAAGCCGTCATGAAAATTCGTGAAGATGTTGCA
ACAGGACAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGTATGCTCGATAAAGTTGCAACGTACTATGAAAATGAAGTTGATAATGCCGTTGATGGCT
TAACTTCAATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTTGTAGGCGGTCTGGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

60.202

97.304

0.586
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365