Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MJX77_RS19320 Genome accession   NZ_CP092454
Coordinates   782141..783001 (+) Length   286 a.a.
NCBI ID   WP_286089233.1    Uniprot ID   -
Organism   Acinetobacter sp. AHP123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 777141..788001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS03675 secG 777747..778076 (-) 330 WP_004795012.1 preprotein translocase subunit SecG -
  MJX77_RS03680 tpiA 778089..778883 (-) 795 WP_005301831.1 triose-phosphate isomerase -
  MJX77_RS03685 pilB 779175..780887 (+) 1713 WP_005301829.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MJX77_RS03690 pilC 780915..782141 (+) 1227 WP_252060577.1 type II secretion system F family protein Machinery gene
  MJX77_RS19320 pilD 782141..783001 (+) 861 WP_286089233.1 A24 family peptidase Machinery gene
  MJX77_RS03705 coaE 783003..783599 (+) 597 WP_151821432.1 dephospho-CoA kinase -
  MJX77_RS03710 - 783596..784510 (-) 915 WP_252060578.1 DMT family transporter -
  MJX77_RS03715 rlmB 784546..785295 (-) 750 WP_151826698.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MJX77_RS03720 - 785398..785724 (-) 327 WP_004795031.1 pyrimidine/purine nucleoside phosphorylase -
  MJX77_RS03725 - 785801..787111 (-) 1311 WP_252060579.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32080.47 Da        Isoelectric Point: 6.4577

>NTDB_id=657741 MJX77_RS19320 WP_286089233.1 782141..783001(+) (pilD) [Acinetobacter sp. AHP123]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLDPEQPIIDHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLVLKGKCGHCQHLISIRYPAVEILTMVCSLVVVLVFGPTVQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=657741 MJX77_RS19320 WP_286089233.1 782141..783001(+) (pilD) [Acinetobacter sp. AHP123]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCATTATTGAGCCTGTGTATTGG
TAGCTTTCTGAATGTGGTGATTTATCGCACCCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGTCAAATGCTACTCG
ATCCTGAACAACCAATCATTGATCATGAAAAACTGACTTTAAGCAAGCCTGCTTCATCATGTCCAGAATGCCATCAGCCC
ATCCGTTGGTATCAAAATATCCCAGTCATCAGTTGGTTGGTTTTAAAAGGTAAATGTGGTCATTGCCAGCATCTGATCAG
CATTCGTTATCCAGCGGTTGAAATATTAACAATGGTATGTTCACTGGTTGTGGTCCTGGTGTTTGGTCCAACCGTACAAA
TGCTTTTCGGCCTAGTCCTGACTTGGGTCCTGATTGCCCTCACCTTTATAGACTTTGATACTCAGCTGCTACCCGACCGT
TTTACCCTACCTTTGGCTGCGCTTGGTCTAGGCATTAACACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
TTACTTGATTGGTTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGCATGGGCTACG
GTGACTTTAAGTTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTATTAAAATTACGCAATGACAATCAGCCCTTTGCATTTGGGCCCTACATTGCCAT
TGCAGGTTGGGTTGCCTTTCTATGGGGTGACCAGATTATGAAAATCTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

95.455

100

0.955
  pilD Acinetobacter baumannii D1279779

95.105

100

0.951
  pilD Vibrio cholerae strain A1552

52.206

95.105

0.497
  pilD Vibrio campbellii strain DS40M4

51.292

94.755

0.486
  pilD Neisseria gonorrhoeae MS11

46.97

92.308

0.434