Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LN244_RS11050 Genome accession   NZ_CP092123
Coordinates   2399928..2401160 (+) Length   410 a.a.
NCBI ID   WP_239039841.1    Uniprot ID   -
Organism   Marinobacterium sediminicola strain 1.7287     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2394928..2406160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN244_RS11025 (LN244_11025) - 2394928..2396184 (+) 1257 WP_239039838.1 PilX N-terminal domain-containing pilus assembly protein -
  LN244_RS11030 (LN244_11030) - 2396177..2396653 (+) 477 WP_239039839.1 hypothetical protein -
  LN244_RS16440 - 2397051..2397425 (-) 375 WP_275424680.1 type IV pilin protein -
  LN244_RS16500 (LN244_11040) - 2397819..2397915 (-) 97 Protein_2145 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LN244_RS11045 (LN244_11045) pilB 2398215..2399915 (+) 1701 WP_239039840.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LN244_RS11050 (LN244_11050) pilC 2399928..2401160 (+) 1233 WP_239039841.1 type II secretion system F family protein Machinery gene
  LN244_RS11055 (LN244_11055) pilD 2401163..2402017 (+) 855 WP_239039842.1 A24 family peptidase Machinery gene
  LN244_RS11060 (LN244_11060) coaE 2402017..2402640 (+) 624 WP_239039843.1 dephospho-CoA kinase -
  LN244_RS11065 (LN244_11065) - 2402633..2402857 (+) 225 WP_239039844.1 DNA gyrase inhibitor YacG -
  LN244_RS11070 (LN244_11070) - 2402929..2404347 (-) 1419 WP_239039845.1 deoxyribodipyrimidine photo-lyase -
  LN244_RS11075 (LN244_11075) - 2404463..2405431 (-) 969 WP_239039846.1 DUF523 and DUF1722 domain-containing protein -
  LN244_RS11080 (LN244_11080) - 2405445..2406095 (-) 651 WP_239039847.1 ChrR family anti-sigma-E factor -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44534.04 Da        Isoelectric Point: 9.3465

>NTDB_id=656043 LN244_RS11050 WP_239039841.1 2399928..2401160(+) (pilC) [Marinobacterium sediminicola strain 1.7287]
MATAAKKTPNKFTFVWQGKDKSGNTSKGKIDADSLATAKALLRKQGIKPNKVQKERSSLFSAKNKPIKPVDIGYFIRQLA
TMMKAGVPLLQAMEIVANGTEKDKLKKMIYTIRDDVNSGSDLSQSLERHPEHFDDLVCSLVHAGEQSGALETILDRIATY
KEKVESLKKKIKKALTYPIAVIIVGIIVSAILLVKVVPQFEHVFQGFGADLPAFTQWVIGLSEWMQEWWFVGMVGMAAIG
FGFTKARANSKQFSDFVDRAVLRMPIFGPILHKAAIARFTRTLATTFAAGVPLVEALDSAAGAAGNVVYEDAILQIRNGV
STGQSLQNAINMTGVFPAMAVQMVSIGEEAGSLDMMLDKVASFYEEEVDNAVDNLSSLIEPMIMSILGVLVGGLVIAMYL
PIFQLGNVVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=656043 LN244_RS11050 WP_239039841.1 2399928..2401160(+) (pilC) [Marinobacterium sediminicola strain 1.7287]
ATGGCTACGGCAGCAAAAAAGACACCCAATAAGTTTACTTTTGTCTGGCAAGGTAAAGACAAAAGCGGTAATACCAGCAA
GGGCAAAATCGATGCAGATAGCTTGGCCACTGCTAAAGCTCTGCTGCGTAAGCAAGGTATAAAGCCAAACAAGGTACAAA
AAGAGCGCAGCAGTCTTTTCAGCGCCAAGAACAAACCGATCAAGCCCGTGGATATTGGCTACTTTATACGCCAGCTTGCG
ACCATGATGAAAGCCGGTGTTCCTCTGCTTCAGGCCATGGAGATCGTGGCCAATGGTACAGAGAAAGACAAACTCAAGAA
GATGATTTACACCATTCGTGATGACGTCAACAGCGGCTCAGACCTGTCACAATCACTCGAGCGTCATCCCGAGCACTTTG
ACGACCTGGTCTGTTCACTGGTTCATGCGGGGGAGCAGTCAGGTGCCTTGGAAACCATTCTTGACCGTATTGCCACTTAC
AAAGAAAAAGTGGAATCCCTTAAGAAAAAAATCAAGAAAGCCCTAACCTACCCCATAGCAGTAATCATCGTAGGTATTAT
CGTTTCAGCCATTCTGCTGGTTAAGGTCGTCCCTCAGTTTGAGCACGTTTTCCAAGGCTTTGGTGCCGATCTGCCGGCAT
TTACACAATGGGTCATAGGCCTATCGGAATGGATGCAGGAATGGTGGTTCGTAGGGATGGTCGGCATGGCGGCCATTGGC
TTCGGCTTCACTAAAGCGCGTGCGAATTCAAAACAATTTTCCGACTTTGTCGACCGCGCGGTTCTTCGAATGCCGATATT
CGGCCCCATTTTACACAAAGCCGCCATTGCACGTTTTACTCGCACATTGGCGACTACATTCGCAGCTGGCGTACCATTAG
TTGAAGCACTTGACTCTGCTGCCGGGGCTGCAGGCAACGTGGTATACGAAGACGCCATTCTTCAGATTCGAAACGGTGTT
TCAACCGGCCAATCGCTACAGAATGCGATTAATATGACCGGCGTCTTCCCTGCGATGGCTGTTCAAATGGTTTCAATTGG
TGAAGAAGCCGGTTCACTCGACATGATGCTGGACAAGGTCGCCAGCTTTTATGAGGAAGAAGTGGATAACGCGGTCGACA
ACCTCTCCAGCCTGATCGAACCGATGATCATGTCGATATTGGGTGTCCTCGTCGGGGGCCTGGTGATCGCCATGTACCTG
CCAATCTTCCAGCTGGGTAATGTGGTTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

56.931

98.537

0.561
  pilC Pseudomonas stutzeri DSM 10701

56.79

98.78

0.561
  pilC Acinetobacter baylyi ADP1

55.774

99.268

0.554
  pilC Acinetobacter baumannii D1279779

55.283

99.268

0.549
  pilG Neisseria gonorrhoeae MS11

45.592

96.829

0.441
  pilG Neisseria meningitidis 44/76-A

45.34

96.829

0.439
  pilC Vibrio campbellii strain DS40M4

42.68

98.293

0.42
  pilC Vibrio cholerae strain A1552

43.325

96.829

0.42
  pilC Thermus thermophilus HB27

38

97.561

0.371