Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHU25_RS20640 Genome accession   NZ_CP108199
Coordinates   4354399..4355007 (-) Length   202 a.a.
NCBI ID   WP_266569404.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00117     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 4349399..4360007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU25_RS20625 (OHU25_20595) - 4351188..4352162 (+) 975 WP_405652651.1 hypothetical protein -
  OHU25_RS20630 (OHU25_20600) clpX 4352244..4353530 (-) 1287 WP_116512991.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHU25_RS20635 (OHU25_20605) clpP 4353686..4354345 (-) 660 WP_227294656.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHU25_RS20640 (OHU25_20610) clpP 4354399..4355007 (-) 609 WP_266569404.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHU25_RS20645 (OHU25_20615) tig 4355292..4356680 (-) 1389 WP_266564251.1 trigger factor -
  OHU25_RS20660 (OHU25_20630) - 4357197..4357391 (-) 195 WP_100594330.1 hypothetical protein -
  OHU25_RS20665 (OHU25_20635) - 4357927..4359075 (+) 1149 WP_326713020.1 acyltransferase family protein -
  OHU25_RS20670 (OHU25_20640) - 4359065..4359531 (-) 467 Protein_4104 HD domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21263.05 Da        Isoelectric Point: 4.5319

>NTDB_id=656043 OHU25_RS20640 WP_266569404.1 4354399..4355007(-) (clpP) [Streptomyces sp. NBC_00117]
MPSAAGEPSLGGGLGDQVYSRLLNDRIIFLGQQVDDEIANKITAQMLLLAAADQDKDIYLYINSPGGSVTAGMAVYDTMQ
YIQNDVVTIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAGIGGTASDVKIQAEYLLRTKKRMAEITARHSGQTV
ETIIRDGDRDRWYTADEAKAYGLIDEIISAATGVPGGGGTGA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=656043 OHU25_RS20640 WP_266569404.1 4354399..4355007(-) (clpP) [Streptomyces sp. NBC_00117]
ATGCCTTCTGCCGCCGGTGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCAGGTCTACAGCCGACTGCTCAACGACCGCAT
CATCTTCCTGGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACTGCCCAGATGCTCCTCCTGGCCGCTGCCGACC
AGGACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGTTCGGTGACGGCCGGCATGGCGGTCTACGACACCATGCAG
TACATCCAGAACGACGTCGTCACCATCGGCATGGGCATGGCCGCCTCCATGGGCCAGTTCCTGCTGACCGGCGGTACCCC
TGGCAAGCGCTTCGCGCTGCCGAACACGGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGTACGGCTTCGGACG
TCAAGATCCAGGCCGAGTACCTGCTGCGCACCAAGAAGCGCATGGCGGAGATCACGGCCCGGCACTCCGGGCAGACCGTC
GAGACGATCATCCGTGACGGTGACCGCGACCGCTGGTACACCGCCGACGAGGCCAAGGCGTACGGCCTCATCGACGAGAT
CATCAGTGCCGCTACGGGTGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.309

94.554

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.785

94.554

0.48
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.351

91.584

0.47
  clpP Streptococcus mutans UA159

53.757

85.644

0.46
  clpP Bacillus subtilis subsp. subtilis str. 168

53.488

85.149

0.455
  clpP Streptococcus pyogenes MGAS315

52.299

86.139

0.45
  clpP Streptococcus pyogenes JRS4

52.299

86.139

0.45
  clpP Streptococcus thermophilus LMG 18311

51.724

86.139

0.446
  clpP Streptococcus thermophilus LMD-9

51.724

86.139

0.446
  clpP Streptococcus pneumoniae Rx1

51.149

86.139

0.441
  clpP Streptococcus pneumoniae D39

51.149

86.139

0.441
  clpP Streptococcus pneumoniae R6

51.149

86.139

0.441
  clpP Streptococcus pneumoniae TIGR4

51.149

86.139

0.441