Detailed information NTG0656044

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LN244_RS11055
• Genome accession: NZ_CP092123
• Coordinates: 2401163..2402017 (+)
• Length: 284 a.a.
• NCBI ID: WP_239039842.1
• Uniprot ID: -
• Organism: Marinobacterium sediminicola strain 1.7287
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2396163..2407017

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LN244_RS11030 (LN244_11030)	-	2396177..2396653 (+)	477	WP_239039839.1	hypothetical protein	-
LN244_RS16440	-	2397051..2397425 (-)	375	WP_275424680.1	type IV pilin protein	-
LN244_RS16500 (LN244_11040)	-	2397819..2397915 (-)	97	Protein_2145	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LN244_RS11045 (LN244_11045)	pilB	2398215..2399915 (+)	1701	WP_239039840.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LN244_RS11050 (LN244_11050)	pilC	2399928..2401160 (+)	1233	WP_239039841.1	type II secretion system F family protein	Machinery gene
LN244_RS11055 (LN244_11055)	pilD	2401163..2402017 (+)	855	WP_239039842.1	A24 family peptidase	Machinery gene
LN244_RS11060 (LN244_11060)	coaE	2402017..2402640 (+)	624	WP_239039843.1	dephospho-CoA kinase	-
LN244_RS11065 (LN244_11065)	-	2402633..2402857 (+)	225	WP_239039844.1	DNA gyrase inhibitor YacG	-
LN244_RS11070 (LN244_11070)	-	2402929..2404347 (-)	1419	WP_239039845.1	deoxyribodipyrimidine photo-lyase	-
LN244_RS11075 (LN244_11075)	-	2404463..2405431 (-)	969	WP_239039846.1	DUF523 and DUF1722 domain-containing protein	-
LN244_RS11080 (LN244_11080)	-	2405445..2406095 (-)	651	WP_239039847.1	ChrR family anti-sigma-E factor	-
LN244_RS11085 (LN244_11085)	-	2406092..2406712 (-)	621	WP_239039848.1	sigma-70 family RNA polymerase sigma factor	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 31282.31 Da
• Isoelectric Point: 6.8451

>NTDB_id=656044 LN244_RS11055 WP_239039842.1 2401163..2402017(+) (pilD) [Marinobacterium sediminicola strain 1.7287]
MIELLVAEPLLAALFALVLSLLVGSFLNVVILRLPVMMQREWDAMLKSEAGEQVEQLPTFNLMTPRSRCGECGHQIRWFE
NIPVISWLVLRGRCSGCGTRIAFRYPFVELLTSLTSAWIIWQFGLTLTGGALVLLTWALITLTFIDLDHHLLPDSITLPL
LWLGLLINTQGVFTSLESAVYGAAAGYLILWSVYWVFKLLTGKEGMGYGDFKLLAAIGAWGGVKVLPLVVLLSSVVGVVL
AVVLIAFRRHQAQNPLPFGPYLAIAGWIALIWGEPIISAYLGSF

Nucleotide

• Length: 855 bp

>NTDB_id=656044 LN244_RS11055 WP_239039842.1 2401163..2402017(+) (pilD) [Marinobacterium sediminicola strain 1.7287]
ATGATTGAATTATTAGTTGCAGAGCCGCTGCTGGCGGCTCTTTTTGCATTGGTACTGTCCCTGCTCGTGGGCAGCTTTCT
GAATGTGGTCATCCTGCGATTGCCGGTCATGATGCAGCGCGAGTGGGATGCGATGCTGAAGTCCGAAGCGGGCGAGCAGG
TTGAGCAGCTTCCGACCTTCAATTTGATGACTCCCCGCTCCCGTTGTGGTGAATGCGGCCACCAGATCCGCTGGTTCGAA
AATATTCCGGTCATCAGCTGGCTGGTACTGCGTGGTCGCTGCAGCGGTTGCGGCACCCGTATTGCCTTCCGCTATCCCTT
TGTGGAACTTTTGACCAGCCTGACCTCTGCCTGGATTATCTGGCAATTTGGCTTGACCCTGACCGGTGGAGCACTGGTGT
TACTGACCTGGGCGCTGATCACCCTGACGTTTATCGACCTGGATCATCACCTGCTGCCGGATTCCATCACCCTGCCCCTG
CTCTGGCTGGGTCTGCTGATCAATACTCAGGGCGTCTTCACGTCGCTGGAAAGCGCCGTCTATGGTGCAGCGGCCGGTTA
CCTGATTCTGTGGAGCGTCTACTGGGTCTTCAAACTGCTGACCGGCAAGGAAGGCATGGGCTATGGTGATTTCAAACTGC
TGGCCGCAATCGGTGCCTGGGGGGGCGTCAAGGTGTTGCCGCTTGTCGTCCTGCTATCCTCTGTCGTGGGTGTCGTGCTG
GCGGTTGTGCTAATTGCTTTTCGCCGCCATCAGGCGCAGAATCCTTTGCCGTTCGGCCCCTATCTGGCCATTGCTGGCTG
GATCGCTTTGATCTGGGGTGAACCGATTATCTCTGCATATCTTGGGAGTTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

• Type IV leader peptidase family (Peptidase_A24) (134-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	51.93	100	0.521
pilD	Vibrio cholerae strain A1552	50.877	100	0.511
pilD	Acinetobacter baumannii D1279779	50.725	97.183	0.493
pilD	Neisseria gonorrhoeae MS11	51.103	95.775	0.489
pilD	Acinetobacter nosocomialis M2	50.362	97.183	0.489