Detailed information NTG0656042

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: LN244_RS11045
• Genome accession: NZ_CP092123
• Coordinates: 2398215..2399915 (+)
• Length: 566 a.a.
• NCBI ID: WP_239039840.1
• Uniprot ID: -
• Organism: Marinobacterium sediminicola strain 1.7287
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2393215..2404915

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LN244_RS11005 (LN244_11005)	-	2393225..2393641 (+)	417	WP_239039836.1	type IV pilin protein	-
LN244_RS16435	-	2393644..2394162 (+)	519	WP_275424679.1	GspH/FimT family pseudopilin	-
LN244_RS11020 (LN244_11020)	-	2394153..2394908 (+)	756	WP_239039837.1	PilW family protein	-
LN244_RS11025 (LN244_11025)	-	2394928..2396184 (+)	1257	WP_239039838.1	PilX N-terminal domain-containing pilus assembly protein	-
LN244_RS11030 (LN244_11030)	-	2396177..2396653 (+)	477	WP_239039839.1	hypothetical protein	-
LN244_RS16440	-	2397051..2397425 (-)	375	WP_275424680.1	type IV pilin protein	-
LN244_RS16500 (LN244_11040)	-	2397819..2397915 (-)	97	Protein_2145	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LN244_RS11045 (LN244_11045)	pilB	2398215..2399915 (+)	1701	WP_239039840.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LN244_RS11050 (LN244_11050)	pilC	2399928..2401160 (+)	1233	WP_239039841.1	type II secretion system F family protein	Machinery gene
LN244_RS11055 (LN244_11055)	pilD	2401163..2402017 (+)	855	WP_239039842.1	A24 family peptidase	Machinery gene
LN244_RS11060 (LN244_11060)	coaE	2402017..2402640 (+)	624	WP_239039843.1	dephospho-CoA kinase	-
LN244_RS11065 (LN244_11065)	-	2402633..2402857 (+)	225	WP_239039844.1	DNA gyrase inhibitor YacG	-
LN244_RS11070 (LN244_11070)	-	2402929..2404347 (-)	1419	WP_239039845.1	deoxyribodipyrimidine photo-lyase	-

Sequence

Protein

• Length: 566 a.a.
• Molecular weight: 62753.64 Da
• Isoelectric Point: 4.9864

>NTDB_id=656042 LN244_RS11045 WP_239039840.1 2398215..2399915(+) (pilB) [Marinobacterium sediminicola strain 1.7287]
MQPLTGLAKRLVNDGVFSAEVAQDAVTQAREANQPFIHYIISHRLVSAHRAATAASEEFGLPLFDLDAINDDALPRDVIS
EALITKHQTLPLMLRENRLYVALADPTNIQALDEIKFSTGKTTEAVIVEEDKLARKLEHFLDNANDAMEELEDTDLDNIE
LGEDKPVDEKDDAEDAANETPIVRFINKVLLDAIKKGASDIHFEPYEKSYRVRCRIDGMLQEFHKPPLNLASRLTARLKV
MSRMDISERRVPQDGRIKLKVSAKRAIDFRVNTLPTLWGEKIVLRILDPSSAKMGVEALGFEPDQKEAYLTTLQQPQGMI
LVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGINQVHVNPKVGLTFAEALRAFLRQDPDVVMVGEIRDLET
AEIAIKAAQTGHMVLSTLHTNSAPETLTRLRNMGVPAFNIATSVSLIIAQRLGRRLCENCKQPADLPEATLLEEGFTPEQ
IPGLQLYEANHEGCGHCNRGYKGRVGIYEMLKMSGEIAQCIMENGNSIDILREAQQQGFRTLRQSGLLKVAAGVTSLEEL
NRVIKT

Nucleotide

• Length: 1701 bp

>NTDB_id=656042 LN244_RS11045 WP_239039840.1 2398215..2399915(+) (pilB) [Marinobacterium sediminicola strain 1.7287]
ATGCAACCCCTTACAGGTCTGGCCAAACGGCTGGTCAACGATGGTGTGTTTTCAGCCGAGGTCGCGCAGGATGCTGTGAC
CCAGGCCCGCGAAGCCAACCAGCCCTTTATTCATTACATCATCAGTCATCGGTTGGTTAGCGCCCACCGGGCGGCTACGG
CAGCTTCTGAAGAGTTTGGCTTGCCATTGTTCGATCTGGACGCCATCAACGATGACGCCCTGCCCAGGGACGTCATTTCG
GAAGCGCTGATTACCAAGCACCAGACCCTGCCGTTGATGCTGCGGGAAAATCGTCTCTATGTCGCACTGGCAGACCCCAC
CAATATACAGGCTCTGGATGAAATCAAGTTCAGCACCGGCAAAACCACCGAAGCGGTCATCGTTGAAGAGGATAAGCTTG
CTCGAAAGCTTGAGCATTTTCTCGACAATGCCAATGATGCCATGGAGGAGCTGGAAGATACTGACCTGGATAATATCGAA
CTCGGTGAAGACAAGCCGGTCGATGAAAAAGATGACGCTGAAGATGCAGCCAACGAGACACCCATCGTTCGTTTTATCAA
CAAGGTGCTGCTGGATGCGATCAAGAAAGGGGCCTCGGATATCCACTTTGAGCCCTACGAAAAAAGTTATCGCGTGCGCT
GCCGTATCGACGGCATGCTGCAGGAATTCCACAAGCCGCCCTTGAATCTCGCCAGCCGCCTGACCGCACGTTTGAAGGTG
ATGTCGCGCATGGATATTTCCGAGCGGCGCGTACCCCAGGATGGCCGTATCAAGCTGAAAGTCTCGGCCAAGCGTGCCAT
CGATTTCCGCGTCAATACCCTGCCGACTCTTTGGGGCGAGAAGATCGTGTTACGTATCCTTGATCCCAGTAGTGCCAAGA
TGGGAGTTGAAGCACTCGGCTTTGAACCGGATCAGAAGGAAGCCTACCTCACTACACTACAGCAACCACAGGGAATGATT
CTGGTGACCGGCCCCACCGGCTCCGGTAAGACAGTCTCGCTTTATACCGGTCTTAATATTCTCAATACCGAAGAGCGTAA
TATCTCGACGGCTGAGGACCCGGTAGAAATCAACCTTGAAGGGATCAACCAGGTCCATGTGAACCCCAAGGTGGGTTTGA
CCTTTGCAGAAGCACTACGTGCGTTCCTGCGTCAGGACCCCGACGTGGTGATGGTGGGTGAGATTCGAGACCTGGAGACG
GCGGAGATTGCAATCAAGGCAGCACAAACAGGTCACATGGTGCTCTCCACCCTGCATACCAACAGTGCCCCCGAGACCCT
GACCCGTTTACGCAACATGGGGGTCCCGGCTTTCAATATCGCAACCTCGGTCAGCTTGATCATTGCACAACGTTTGGGAC
GAAGACTTTGCGAGAATTGCAAACAACCGGCCGACCTGCCGGAAGCCACTTTGCTGGAAGAAGGCTTTACCCCGGAGCAG
ATACCTGGCCTGCAGCTGTATGAAGCCAACCATGAAGGCTGCGGCCACTGCAACCGAGGCTACAAGGGACGGGTCGGTAT
TTATGAAATGTTGAAGATGTCAGGTGAAATCGCACAGTGCATCATGGAGAACGGTAACTCCATTGATATCCTGCGTGAAG
CACAGCAGCAAGGGTTCAGGACTCTGCGCCAATCAGGGCTGCTTAAAGTGGCGGCGGGCGTGACCAGTCTTGAAGAATTG
AACCGGGTTATTAAAACCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (188-455)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (41-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baumannii D1279779	59.574	99.647	0.594
pilB	Acinetobacter baylyi ADP1	59.325	99.47	0.59
pilB	Legionella pneumophila strain ERS1305867	55.827	93.993	0.525
pilB	Vibrio cholerae strain A1552	51.852	100	0.519
pilB	Vibrio parahaemolyticus RIMD 2210633	49.033	100	0.493
pilB	Vibrio campbellii strain DS40M4	48.94	100	0.489
pilF	Neisseria gonorrhoeae MS11	47.679	98.94	0.472
pilF	Thermus thermophilus HB27	36.538	100	0.369
pilB/pilB1	Synechocystis sp. PCC 6803	39.847	92.226	0.367
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.6	88.339	0.367