Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   L3Q72_RS14700 Genome accession   NZ_CP092106
Coordinates   3276969..3278078 (-) Length   369 a.a.
NCBI ID   WP_275130636.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3271969..3283078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS14665 (L3Q72_14655) - 3272242..3272505 (-) 264 WP_275130630.1 DUF1488 domain-containing protein -
  L3Q72_RS14670 (L3Q72_14660) aroE 3272505..3273338 (-) 834 WP_275130631.1 shikimate dehydrogenase -
  L3Q72_RS14675 (L3Q72_14665) - 3273414..3273971 (-) 558 WP_275132125.1 L-threonylcarbamoyladenylate synthase -
  L3Q72_RS14680 (L3Q72_14670) purE 3274159..3274644 (+) 486 WP_275130632.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  L3Q72_RS14685 (L3Q72_14675) - 3274650..3275777 (+) 1128 WP_275130633.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  L3Q72_RS14690 (L3Q72_14680) - 3275926..3276492 (-) 567 WP_275130634.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  L3Q72_RS14695 (L3Q72_14685) - 3276493..3276966 (-) 474 WP_275130635.1 DUF494 family protein -
  L3Q72_RS14700 (L3Q72_14690) dprA 3276969..3278078 (-) 1110 WP_275130636.1 DNA-processing protein DprA Machinery gene
  L3Q72_RS14705 (L3Q72_14695) def 3278408..3278920 (+) 513 WP_275130637.1 peptide deformylase -
  L3Q72_RS14710 (L3Q72_14700) fmt 3278933..3279880 (+) 948 WP_275130638.1 methionyl-tRNA formyltransferase -
  L3Q72_RS14715 (L3Q72_14705) rsmB 3279941..3281221 (+) 1281 WP_275130639.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  L3Q72_RS14720 (L3Q72_14710) trkA 3281247..3282623 (+) 1377 WP_275130640.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40431.13 Da        Isoelectric Point: 6.8325

>NTDB_id=655920 L3Q72_RS14700 WP_275130636.1 3276969..3278078(-) (dprA) [Vibrio sp. JC009]
MTSEKLSAWLTLSFTPYLGGNRLSRLLRYGSAEEIINFTPERLRGLGFKEVQISFIKDKARAEVESCLKWRERSHDQHII
TSASPDYPPLLKEISAFPPVLFIKGNPSVLSEPQLAIVGSRNASVHGLNHARQFARDLAQKGLTITSGMALGVDGYAHDG
ALAGEGNTIAVLGSGLDNLYPKRHKKLAQRIIENGGALVSEFRPDAFPRPEHFPRRNRIISGMSLGVLVVEAAEKSGSLI
TARYALEQGREVFALPGSINSPGARGCNALIKEGACLVQSSSDILTEVEYIMTWSANRQKDLFHHEADNEELPFTELLAN
VGIEEATPVDILAERTNIPVNEIMMQLLELELQGHVAAVSGGYIRTRRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=655920 L3Q72_RS14700 WP_275130636.1 3276969..3278078(-) (dprA) [Vibrio sp. JC009]
ATGACATCTGAAAAACTTTCCGCATGGTTAACTCTGAGTTTTACTCCCTACCTGGGAGGAAACCGGCTATCACGGTTACT
CAGATACGGTTCGGCTGAGGAAATCATTAACTTTACTCCGGAAAGGTTGAGGGGGCTTGGGTTTAAAGAGGTTCAGATCT
CCTTTATTAAGGATAAAGCCAGAGCGGAGGTTGAATCTTGTCTTAAGTGGCGCGAGCGCAGTCATGACCAGCATATTATT
ACCTCTGCCAGTCCTGATTATCCGCCTCTTCTCAAAGAGATTAGTGCTTTTCCTCCGGTTTTATTTATTAAAGGTAACCC
TTCCGTTTTATCTGAGCCTCAGCTTGCGATTGTGGGCAGCCGTAATGCTTCTGTTCATGGCTTAAACCACGCCCGGCAGT
TTGCCCGGGACTTAGCTCAAAAGGGGCTGACAATCACAAGCGGAATGGCTTTGGGAGTAGATGGCTACGCTCATGATGGT
GCGCTGGCCGGTGAGGGGAATACGATTGCTGTTCTTGGCTCGGGGCTGGATAATCTCTACCCAAAAAGGCATAAAAAGCT
GGCACAGAGAATTATTGAAAATGGAGGGGCGTTGGTATCTGAGTTCCGGCCGGATGCTTTTCCAAGGCCTGAGCACTTTC
CCAGAAGAAACCGCATCATTAGCGGCATGTCTCTTGGTGTGCTGGTTGTTGAGGCGGCGGAGAAAAGCGGCTCTTTGATA
ACAGCAAGATATGCCCTTGAGCAGGGCAGAGAGGTGTTTGCTCTGCCTGGTTCAATAAACTCACCGGGTGCAAGAGGTTG
CAATGCCTTGATTAAGGAGGGTGCCTGCCTGGTTCAGTCCTCATCAGATATCTTAACTGAGGTCGAATACATCATGACCT
GGTCAGCAAACAGGCAAAAAGACCTTTTTCACCACGAAGCGGACAATGAAGAATTGCCATTTACCGAACTCTTAGCTAAC
GTAGGAATAGAAGAGGCGACACCGGTTGATATTTTGGCAGAGAGAACCAATATCCCTGTCAATGAGATCATGATGCAGCT
TCTGGAGCTCGAGCTTCAAGGGCATGTTGCCGCTGTATCCGGCGGTTATATTCGAACGAGGAGGGGTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-279)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.842

99.187

0.623
  dprA Vibrio cholerae strain A1552

58.445

100

0.591
  dprA Glaesserella parasuis strain SC1401

46.133

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.353

98.374

0.436
  dprA Neisseria meningitidis strain C311

37.845

100

0.409
  dprA Neisseria meningitidis MC58

37.845

100

0.409
  dprA Neisseria gonorrhoeae MS11

37.28

100

0.401
  dprA Neisseria gonorrhoeae strain FA1090

37.028

100

0.398
  dprA Haemophilus influenzae Rd KW20

49.819

75.068

0.374
  dprA Acinetobacter baumannii D1279779

42.547

87.263

0.371
  dprA Acinetobacter baumannii strain A118

42.767

86.179

0.369