Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHT61_RS10210 Genome accession   NZ_CP108143
Coordinates   2354571..2356304 (+) Length   577 a.a.
NCBI ID   WP_329037071.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00178     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2349571..2361304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT61_RS10180 (OHT61_10170) - 2351183..2351794 (-) 612 WP_329037069.1 hypothetical protein -
  OHT61_RS10200 (OHT61_10190) - 2352606..2352908 (+) 303 WP_329043188.1 YtxH domain-containing protein -
  OHT61_RS10205 (OHT61_10195) - 2353014..2354459 (+) 1446 WP_329037070.1 FGGY family carbohydrate kinase -
  OHT61_RS10210 (OHT61_10200) rcrP 2354571..2356304 (+) 1734 WP_329037071.1 ABC transporter ATP-binding protein Regulator
  OHT61_RS10215 (OHT61_10205) rcrQ 2356304..2358229 (+) 1926 WP_329037073.1 ABC transporter ATP-binding protein Regulator
  OHT61_RS10220 (OHT61_10210) rpoS 2358285..2359361 (-) 1077 WP_329043190.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62497.55 Da        Isoelectric Point: 6.0277

>NTDB_id=654795 OHT61_RS10210 WP_329037071.1 2354571..2356304(+) (rcrP) [Streptomyces sp. NBC_00178]
MLIKILRTYLGPYRRPILLLVLLQLLQTSASLYLPSLNADIIDNGVVRGDTGYILRYGGVMIAVSVLQVVCNVGAVYYGA
RTASALGREVRASVFGRVQSFSAREVGRFGAPSLITRTTNDVQQIQMLVLLAFTLMVSAPIMCVGGVILALGQDVPLSGV
LLAVLPVLGISVSLIVRRMRPLFRTMQVRLDTVNRVLREQITGNRVIRAFIRDDYEEGRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFIMVPRAEVCAERVQEVLDTESSVVP
PSAPVTKLLKHGHLEIRGAEFRYPGAEEPVLRAVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGDVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKGFVEDLEHGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSEETAAATVVIVAQRVSTIRDADRILVLDEGRVVGNGSHRELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=654795 OHT61_RS10210 WP_329037071.1 2354571..2356304(+) (rcrP) [Streptomyces sp. NBC_00178]
GTGCTCATAAAAATCCTGCGGACCTACCTGGGTCCGTACAGACGGCCGATCCTGCTGCTGGTCCTGCTCCAGCTCCTGCA
GACCTCGGCAAGCCTCTACCTGCCCAGTCTCAACGCGGACATCATCGACAACGGTGTCGTGCGGGGGGACACCGGCTACA
TCCTTCGCTACGGCGGGGTGATGATCGCCGTGAGCGTCCTCCAGGTCGTCTGCAACGTCGGCGCGGTCTACTACGGCGCC
AGGACGGCGTCCGCGCTCGGGCGTGAGGTGCGGGCGTCGGTCTTCGGCCGGGTGCAGTCGTTCTCCGCGCGCGAGGTCGG
CAGGTTCGGCGCTCCTTCGCTGATCACGCGTACGACCAACGACGTGCAGCAGATCCAGATGCTCGTGCTGCTGGCCTTCA
CCCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCGTCATCCTGGCGCTCGGCCAGGACGTCCCCCTGTCGGGCGTG
CTGCTGGCGGTGCTGCCCGTCCTCGGCATCTCGGTGAGCCTGATCGTGCGGCGGATGCGTCCGCTGTTCCGCACGATGCA
GGTGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCATACGGGACG
ACTACGAGGAAGGGCGCTTCCGGGGCGCGAACACCGAACTGACGGACGTGGCGCTGTCGACGGGCCGCCTGATGGCCCTC
ATGTTCCCGACCGTGATGACGGTGGTGAACCTGTCGTCGATCGCGGTCGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGGGCGCTGACGGCCTTCCTGGCGTATCTGATGCAGATCGTCATGGCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGTGCCGAGGTCTGCGCGGAGCGTGTCCAGGAGGTCCTGGACACCGAGTCGAGCGTGGTGCCG
CCGAGCGCCCCCGTCACGAAGCTGCTCAAGCACGGCCACCTGGAGATACGGGGTGCGGAGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGTGCGGTCGATCTCGTGGCGCGGCCCGGGGAGACCACCGCGATCATCGGGTCGACGGGCAGTGGGA
AGTCGACGCTGCTGGGCCTCGTGCCGCGGCTGTTCGACGCGACGGACGGCGATGTGCTCGTCGACGGTACGGACGTGCGG
ACCCTGGATCCCGTCCTGCTGGCGAAGACAGTGAGCCTGGTGCCCCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGGTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCCCTGGAGGTGGCGCAGGCGAAGGGCTTCG
TCGAGGACCTCGAACACGGTCTGAACGCCCCGATCGCGCAGGGCGGCACCAACGTGTCCGGCGGACAGCGCCAACGCCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTACCTGTTCGACGACTCGTTCTCGGCCCTGGACTACGCGACGGA
CGCCGCTCTGCGGGCCGCGCTGTCCGAGGAGACGGCGGCGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCCACGATCC
GTGACGCCGACCGCATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGGAACGGCAGCCATCGCGAGCTCATGGACGGAAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.884

94.107

0.385