Detailed information NTG0654796

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L3V77_RS14355
• Genome accession: NZ_CP091975
• Coordinates: 3149028..3149897 (+)
• Length: 289 a.a.
• NCBI ID: WP_275134748.1
• Uniprot ID: -
• Organism: Vibrio sp. DW001
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3144028..3154897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3V77_RS14335 (L3V77_14320)	nadC	3144706..3145593 (+)	888	WP_275134745.1	carboxylating nicotinate-nucleotide diphosphorylase	-
L3V77_RS14340 (L3V77_14325)	-	3146022..3146426 (+)	405	WP_275136785.1	pilin	-
L3V77_RS14345 (L3V77_14330)	pilB	3146484..3147731 (+)	1248	WP_275134746.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
L3V77_RS14350 (L3V77_14335)	-	3147768..3148991 (+)	1224	WP_275134747.1	type II secretion system F family protein	-
L3V77_RS14355 (L3V77_14340)	pilD	3149028..3149897 (+)	870	WP_275134748.1	A24 family peptidase	Machinery gene
L3V77_RS14360 (L3V77_14345)	coaE	3149899..3150501 (+)	603	WP_275134749.1	dephospho-CoA kinase	-
L3V77_RS14365 (L3V77_14350)	zapD	3150540..3151280 (+)	741	WP_275134750.1	cell division protein ZapD	-
L3V77_RS14370 (L3V77_14355)	yacG	3151305..3151502 (+)	198	WP_275136786.1	DNA gyrase inhibitor YacG	-
L3V77_RS14375 (L3V77_14360)	rplS	3151623..3151976 (-)	354	WP_195704269.1	50S ribosomal protein L19	-
L3V77_RS14380 (L3V77_14365)	trmD	3152033..3152773 (-)	741	WP_275134751.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
L3V77_RS14385 (L3V77_14370)	rimM	3152801..3153355 (-)	555	WP_275134752.1	ribosome maturation factor RimM	-
L3V77_RS14390 (L3V77_14375)	rpsP	3153374..3153622 (-)	249	WP_195704272.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32933.28 Da
• Isoelectric Point: 7.5681

>NTDB_id=654796 L3V77_RS14355 WP_275134748.1 3149028..3149897(+) (pilD) [Vibrio sp. DW001]
MELFEYYPWLYPVFAGIFGLIVGSFLNVVIHRVPIMMEREWKQDCAETFPELNIPLDNKKFNLSIPRSSCPRCKTPLRLI
DNIPIISWLLLKGKCHHCKEPVSIRYPLVELLTAIMSCTIAYYFELSYYSVALIFFSFALISATFIDLDTMLLPDSITLP
LTWFGLFLALIGWSPVSLQDAVIGAIAGYLCLWSVYWVFKIVTGKEGMGYGDFKLLAALGAWLGWQHLPMIVLLSSFVGL
IFGLIQLRLQKKGIDRQFPFGPYLAIAGWISLLWGNQIMVWYYSSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=654796 L3V77_RS14355 WP_275134748.1 3149028..3149897(+) (pilD) [Vibrio sp. DW001]
ATGGAATTATTCGAGTATTACCCTTGGCTTTACCCTGTTTTCGCGGGGATATTTGGACTCATTGTCGGCAGTTTTTTAAA
TGTGGTAATACACCGCGTACCAATCATGATGGAGCGCGAATGGAAACAAGACTGCGCGGAAACATTCCCAGAGCTTAATA
TTCCATTAGATAACAAGAAATTTAATTTAAGCATTCCTCGTTCTAGTTGCCCTAGATGCAAAACGCCACTACGTTTAATT
GATAACATCCCAATAATAAGTTGGTTATTGCTTAAAGGAAAATGCCATCATTGCAAAGAACCTGTCAGTATTCGTTATCC
TTTAGTCGAGTTATTAACGGCAATAATGAGTTGCACAATTGCTTACTATTTTGAATTAAGTTACTACTCGGTAGCTCTTA
TCTTCTTTTCCTTCGCTTTAATCTCAGCAACGTTTATCGATCTCGATACCATGCTTCTTCCCGATAGCATCACCTTACCA
TTAACTTGGTTTGGTCTCTTCCTTGCTTTGATTGGGTGGAGTCCTGTCTCTTTGCAAGATGCCGTAATTGGAGCCATTGC
TGGATACCTTTGTCTTTGGAGCGTGTATTGGGTATTTAAGATAGTCACAGGTAAAGAAGGCATGGGATATGGCGACTTTA
AACTTCTGGCAGCACTTGGCGCTTGGCTAGGTTGGCAACACCTACCTATGATTGTGTTATTGTCCTCTTTTGTAGGACTC
ATATTCGGACTCATTCAGTTACGCTTGCAAAAAAAAGGAATCGATAGACAGTTTCCCTTTGGTCCATATCTTGCTATTGC
TGGATGGATAAGTTTACTATGGGGAAATCAAATCATGGTCTGGTACTATTCTTCTGTATTAGGTATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	70.242	100	0.702
pilD	Vibrio cholerae strain A1552	68.403	99.654	0.682
pilD	Acinetobacter nosocomialis M2	50.37	93.426	0.471
pilD	Acinetobacter baumannii D1279779	49.63	93.426	0.464
pilD	Neisseria gonorrhoeae MS11	50.385	89.965	0.453