Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHT61_RS10215 Genome accession   NZ_CP108143
Coordinates   2356304..2358229 (+) Length   641 a.a.
NCBI ID   WP_329037073.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00178     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2351304..2363229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT61_RS10200 (OHT61_10190) - 2352606..2352908 (+) 303 WP_329043188.1 YtxH domain-containing protein -
  OHT61_RS10205 (OHT61_10195) - 2353014..2354459 (+) 1446 WP_329037070.1 FGGY family carbohydrate kinase -
  OHT61_RS10210 (OHT61_10200) rcrP 2354571..2356304 (+) 1734 WP_329037071.1 ABC transporter ATP-binding protein Regulator
  OHT61_RS10215 (OHT61_10205) rcrQ 2356304..2358229 (+) 1926 WP_329037073.1 ABC transporter ATP-binding protein Regulator
  OHT61_RS10220 (OHT61_10210) rpoS 2358285..2359361 (-) 1077 WP_329043190.1 RNA polymerase sigma factor Regulator
  OHT61_RS10225 (OHT61_10215) dnaG 2359540..2361447 (-) 1908 WP_329037075.1 DNA primase -
  OHT61_RS10230 (OHT61_10220) - 2361544..2362803 (-) 1260 WP_329037077.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68887.93 Da        Isoelectric Point: 5.0455

>NTDB_id=654796 OHT61_RS10215 WP_329037073.1 2356304..2358229(+) (rcrQ) [Streptomyces sp. NBC_00178]
MAGPGGRMMSMGPTERSMDFKGSGKRLLRRFSKEKSSLSLMLGAGTLSVALSVAGPKILGSATDLIFAGVVGRGLQEGTT
KEQAVEGLREKGSGGLADVLSGVDFTPGEGIDFGAVGHVLLLALAVYVAAGLLMLVSTRVSIRVINRVVYQLREDLQTKL
ARLPLSYFDRQQRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTIPLSVVVATRIGKR
SQPHFVAQWKVTGALNAHIEEMYTGHTLVKTFGRQEESARDFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVFGLLDAEEQAPDPDTAERPAELRGSVSLEN
VSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDAARMSRDELRSAIGMVLQDTW
LFGGTIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHDELLAAGGAYARLYAAQFAQALAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=654796 OHT61_RS10215 WP_329037073.1 2356304..2358229(+) (rcrQ) [Streptomyces sp. NBC_00178]
ATGGCCGGGCCTGGCGGACGGATGATGTCCATGGGACCCACCGAGAGGTCGATGGACTTCAAGGGGTCCGGGAAGCGGTT
GCTGAGACGGTTCAGCAAGGAGAAGTCGTCGCTGTCCCTGATGCTGGGGGCGGGCACGCTGAGCGTGGCTCTCTCCGTGG
CGGGGCCGAAGATCCTCGGTTCGGCGACGGACCTGATCTTCGCGGGGGTCGTCGGCCGGGGGCTCCAGGAGGGCACGACG
AAGGAGCAGGCCGTCGAGGGCCTGCGGGAGAAGGGCAGCGGCGGTCTCGCGGACGTGCTGTCCGGCGTGGACTTCACCCC
CGGCGAGGGCATCGACTTCGGGGCGGTGGGGCACGTCCTCCTGCTGGCGCTGGCGGTGTACGTCGCCGCGGGGCTCCTGA
TGCTGGTGTCGACACGGGTCTCGATCCGGGTGATCAACCGGGTCGTCTACCAGCTGCGCGAGGACCTGCAGACGAAGTTG
GCGCGGCTGCCGCTGTCGTACTTCGACCGGCAGCAGCGCGGTGAGGTCCTCAGCCGCGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGGTCATGATGTTCT
GGATCTCTCCGCTGCTGGCCCTGGTGGCGCTGGTGACGATCCCGCTGTCGGTGGTCGTCGCGACACGGATCGGGAAGCGC
TCGCAGCCGCACTTCGTGGCGCAGTGGAAGGTGACGGGCGCCCTCAACGCCCACATCGAGGAGATGTACACCGGCCACAC
GCTGGTCAAGACGTTCGGTCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCGGTT
TCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTCCTCGTCGCGGTC
GTCGGCGGGCTGCGGGTGGCGTCGGGTTCCCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCTC
GATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGCATCGCGTCGGCCGAGCGGGTCTTCGGCCTGC
TGGACGCCGAGGAACAGGCACCCGACCCGGACACGGCGGAGCGGCCCGCGGAGCTGCGCGGCAGCGTCTCGCTGGAGAAC
GTGTCCTTCCGGTACGACCCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGAGCGTGGAGCCGGGCCACACGGTCGCGAT
CGTCGGACCGACCGGCGCCGGCAAGACGACGCTGGTCAATCTCCTGATGCGGTTCTACGAGGTGACGGGCGGCCGCATCA
CCCTCGACGGGGTCGACGCCGCGCGCATGTCACGCGACGAACTCCGTTCGGCCATAGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGGGGCACCATCGCGGAGAACATCGCGTACGGCGCCTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GCGCGCGGCCCACGCCGACCGCTTCGTGCGTACCCTGCCGGACGGCTACGACACCGTGATCGACGACGAGGGGTCGGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTCTCCGACCCGGTGATCCTCGTGCTCGACGAGGCC
ACCAGCTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTGGCCCACGGCCGCACCAGCTTCGT
GATCGCGCACCGTCTCTCCACCATCCGGGACGCGGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGCTGGCGGCCGGCGGCGCCTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGCTGGCGGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-562)

ABC transporter transmembrane region (ABC_membrane)

(57-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.75

82.371

0.36