Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L6173_RS16370 Genome accession   NZ_CP091781
Coordinates   3543223..3544482 (+) Length   419 a.a.
NCBI ID   WP_049451230.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain PSKL2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3538223..3549482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6173_RS16350 (L6173_16350) pilR 3538415..3539788 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  L6173_RS16355 (L6173_16355) pilB 3539914..3541647 (-) 1734 WP_005410796.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L6173_RS16360 (L6173_16360) pilA/pilAI 3541870..3542277 (-) 408 WP_149501300.1 pilin Machinery gene
  L6173_RS16365 (L6173_16365) - 3542427..3542870 (-) 444 WP_149501301.1 pilin -
  L6173_RS16370 (L6173_16370) pilC 3543223..3544482 (+) 1260 WP_049451230.1 type II secretion system F family protein Machinery gene
  L6173_RS16375 (L6173_16375) - 3544490..3545353 (+) 864 WP_049451231.1 A24 family peptidase -
  L6173_RS16380 (L6173_16380) coaE 3545365..3545976 (+) 612 WP_049451232.1 dephospho-CoA kinase -
  L6173_RS16385 (L6173_16385) - 3546236..3546622 (-) 387 WP_005410802.1 hypothetical protein -
  L6173_RS16390 (L6173_16390) - 3547117..3548445 (-) 1329 WP_005410803.1 HAMP domain-containing sensor histidine kinase -
  L6173_RS16395 (L6173_16395) - 3548450..3549127 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45854.32 Da        Isoelectric Point: 10.1706

>NTDB_id=653635 L6173_RS16370 WP_049451230.1 3543223..3544482(+) (pilC) [Stenotrophomonas maltophilia strain PSKL2]
MSVSRSAIKKEPVARATIELQPFVWVGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
IFLIVVGSAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=653635 L6173_RS16370 WP_049451230.1 3543223..3544482(+) (pilC) [Stenotrophomonas maltophilia strain PSKL2]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATTGAGCTGCAGCCGTTTGTCTGGGTGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGCGCTGCCGGCAGCCCGGTCAAGCCAAAGGAC
ATCGCCTTCTTCAGCCGTCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCACGGATGAAGAAGCTGGTGGACACCATCCGCACCGACATCGAGGGCGGTTCCTCGATGTATGAGG
CGGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTCGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTCCCGCAGTTCGAGGACGTGTTCA
AGAGCTTTGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAACCTGTCACGGTTCATGGTGTCGTGGTGGTGGCTG
ATATTCCTGATCGTGGTGGGCTCCGCTGTCGGTGCCATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGTGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTTTCGGTCGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.695

96.897

0.52
  pilC Legionella pneumophila strain ERS1305867

52.632

95.227

0.501
  pilC Acinetobacter baylyi ADP1

50.493

96.897

0.489
  pilC Acinetobacter baumannii D1279779

49.874

94.749

0.473
  pilG Neisseria gonorrhoeae MS11

43.719

94.988

0.415
  pilG Neisseria meningitidis 44/76-A

43.467

94.988

0.413
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.895

95.704

0.401
  pilC Thermus thermophilus HB27

37.562

95.943

0.36