Detailed information NTG0653632

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: L6173_RS16350
• Genome accession: NZ_CP091781
• Coordinates: 3538415..3539788 (+)
• Length: 457 a.a.
• NCBI ID: WP_005410795.1
• Uniprot ID: A0A854E393
• Organism: Stenotrophomonas maltophilia strain PSKL2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3533415..3544788

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6173_RS16335 (L6173_16335)	sucD	3534317..3535192 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
L6173_RS16340 (L6173_16340)	sucC	3535214..3536383 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
L6173_RS16345 (L6173_16345)	-	3536741..3538354 (+)	1614	WP_005414304.1	ATP-binding protein	-
L6173_RS16350 (L6173_16350)	pilR	3538415..3539788 (+)	1374	WP_005410795.1	sigma-54 dependent transcriptional regulator	Regulator
L6173_RS16355 (L6173_16355)	pilB	3539914..3541647 (-)	1734	WP_005410796.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L6173_RS16360 (L6173_16360)	pilA/pilAI	3541870..3542277 (-)	408	WP_149501300.1	pilin	Machinery gene
L6173_RS16365 (L6173_16365)	-	3542427..3542870 (-)	444	WP_149501301.1	pilin	-
L6173_RS16370 (L6173_16370)	pilC	3543223..3544482 (+)	1260	WP_049451230.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49515.76 Da
• Isoelectric Point: 6.4407

>NTDB_id=653632 L6173_RS16350 WP_005410795.1 3538415..3539788(+) (pilR) [Stenotrophomonas maltophilia strain PSKL2]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=653632 L6173_RS16350 WP_005410795.1 3538415..3539788(+) (pilR) [Stenotrophomonas maltophilia strain PSKL2]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCTGTGGAGGCACTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCGGCACCGGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGTGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCATCGCA
AGGGCAGTTTCAGCGGCGCGCACGCCGACAAGCCCGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCACTGCGCGAACGCCGCCAGGACCTGCCCGAA
CTGGCCGCCGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCGGCGCTGGAAGC
ACTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGACGACCTGCGCCTGCCACAGCACGCGCCGCGTGCACCTGGCAGTGCGGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGTGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

3D structure

• AlphaFold DB: A0A854E393

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.656	99.344	0.632
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49
luxO	Vibrio cholerae strain A1552	37.079	97.374	0.361