Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   LVJ81_RS01620 Genome accession   NZ_CP091512
Coordinates   351974..353203 (+) Length   409 a.a.
NCBI ID   WP_019957100.1    Uniprot ID   -
Organism   Vitreoscilla stercoraria strain SAG 1488-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346974..358203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ81_RS01605 (LVJ81_01605) - 348297..348617 (-) 321 WP_019957097.1 helix-hairpin-helix domain-containing protein -
  LVJ81_RS01610 (LVJ81_01610) - 349075..350115 (+) 1041 WP_019957098.1 porin -
  LVJ81_RS01615 (LVJ81_01615) pilF 350250..351941 (+) 1692 WP_019957099.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ81_RS01620 (LVJ81_01620) pilG 351974..353203 (+) 1230 WP_019957100.1 type II secretion system F family protein Machinery gene
  LVJ81_RS01625 (LVJ81_01625) pilD 353206..354090 (+) 885 WP_019957101.1 A24 family peptidase Machinery gene
  LVJ81_RS01630 (LVJ81_01630) coaE 354087..354689 (+) 603 WP_019957102.1 dephospho-CoA kinase -
  LVJ81_RS01635 (LVJ81_01635) zapD 354698..355486 (+) 789 WP_019957103.1 cell division protein ZapD -
  LVJ81_RS01640 (LVJ81_01640) yacG 355474..355662 (+) 189 WP_019957104.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45033.02 Da        Isoelectric Point: 9.3462

>NTDB_id=651902 LVJ81_RS01620 WP_019957100.1 351974..353203(+) (pilG) [Vitreoscilla stercoraria strain SAG 1488-6]
MATAKKETVKKEKGTRFSFEGKSRASQQVMRGEVIAKNEKDAQEKLARRGIQVVHLRKMKTAKRSKIKHSDVTLFARQLA
TMMKAGLPLLQAFEIVAKGHSNANMTDLLMEVRSDIEQGTALAAAFGKHPKYFDKLFCSLVDAGEAGGVLDSLLDKLATY
MEKTEAIKRRVKGALMYPTAVVIVAVGLIVLMMLFVLPSFGKIYSGLGAELPHLTQIVMNVSDFFVANWWWMLLLTIAAF
IAWKVAFNKFFAVQKAVDKLMLNMPIFGEIVKKAAIARWARTTATLFAAGVPLVEALESVAGAAGNIWYEEGTFQIRSKV
QQGTSLTSAMQETDLFPNMILQMAAIGEESGSIDDMLNKAAEFYEDEVDQAVDTLSSLMEPIIMVVLGSIVGFLLIAMYL
PLFSMGDAF

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=651902 LVJ81_RS01620 WP_019957100.1 351974..353203(+) (pilG) [Vitreoscilla stercoraria strain SAG 1488-6]
ATGGCAACAGCTAAAAAAGAAACGGTCAAAAAAGAAAAAGGCACACGTTTTTCTTTTGAGGGCAAAAGTAGAGCCAGTCA
GCAAGTCATGCGTGGTGAAGTGATTGCGAAAAATGAAAAAGATGCACAGGAGAAACTTGCTCGACGTGGTATTCAAGTCG
TTCATTTACGTAAAATGAAGACGGCCAAACGCAGTAAAATCAAACATTCTGATGTGACACTGTTCGCCCGTCAATTGGCT
ACCATGATGAAAGCAGGGTTACCTTTGTTACAAGCATTTGAAATTGTGGCTAAAGGGCATTCGAATGCGAACATGACAGA
CTTGTTGATGGAAGTTCGATCTGATATTGAGCAAGGTACGGCACTGGCCGCTGCATTTGGTAAACATCCCAAGTATTTTG
ATAAATTGTTTTGTAGTTTGGTAGATGCAGGTGAAGCCGGCGGTGTATTGGATTCATTGTTAGACAAACTGGCTACTTAT
ATGGAAAAAACCGAAGCCATTAAGCGTCGTGTTAAGGGCGCTTTGATGTACCCAACCGCCGTTGTTATTGTGGCAGTAGG
CTTAATTGTTTTAATGATGTTATTTGTATTGCCTTCGTTTGGTAAAATTTATTCAGGTCTGGGGGCTGAACTACCGCATT
TAACTCAAATTGTTATGAATGTGTCGGATTTCTTTGTTGCTAACTGGTGGTGGATGTTGCTTTTGACGATTGCGGCATTT
ATTGCATGGAAAGTAGCATTTAATAAGTTTTTTGCAGTTCAAAAAGCTGTGGATAAACTGATGTTGAACATGCCGATTTT
TGGTGAGATTGTTAAAAAAGCTGCGATTGCACGTTGGGCACGTACGACTGCGACATTGTTTGCAGCTGGTGTACCTTTGG
TAGAGGCTTTAGAGTCGGTTGCAGGTGCGGCGGGTAATATTTGGTATGAAGAAGGCACATTCCAAATTCGCTCTAAAGTT
CAGCAAGGTACGTCTTTGACATCAGCGATGCAAGAAACCGATTTATTTCCCAATATGATTTTGCAAATGGCTGCTATTGG
TGAAGAGTCAGGTTCGATTGACGATATGCTTAATAAGGCTGCTGAATTTTATGAAGATGAAGTCGACCAAGCGGTAGATA
CCTTATCTAGCTTGATGGAACCTATTATTATGGTGGTCTTGGGTAGTATTGTTGGCTTCTTATTGATTGCCATGTACTTG
CCATTGTTCAGTATGGGTGATGCATTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

58.853

98.044

0.577
  pilG Neisseria meningitidis 44/76-A

58.354

98.044

0.572
  pilC Legionella pneumophila strain ERS1305867

48.232

96.822

0.467
  pilC Pseudomonas stutzeri DSM 10701

45.98

97.311

0.447
  pilC Acinetobacter baylyi ADP1

45.202

96.822

0.438
  pilC Acinetobacter baumannii D1279779

45.063

96.577

0.435
  pilC Thermus thermophilus HB27

37.186

97.311

0.362
  pilC Vibrio campbellii strain DS40M4

39.05

92.665

0.362
  pilC Vibrio cholerae strain A1552

39.153

92.421

0.362