NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	LVJ81_RS01625	Genome accession	NZ_CP091512
Coordinates	353206..354090 (+)	Length	294 a.a.
NCBI ID	WP_019957101.1	Uniprot ID	A0A2L0PNS6
Organism	Vitreoscilla stercoraria strain SAG 1488-6
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 348206..359090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ81_RS01605 (LVJ81_01605)	-	348297..348617 (-)	321	WP_019957097.1	helix-hairpin-helix domain-containing protein	-
LVJ81_RS01610 (LVJ81_01610)	-	349075..350115 (+)	1041	WP_019957098.1	porin	-
LVJ81_RS01615 (LVJ81_01615)	pilF	350250..351941 (+)	1692	WP_019957099.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LVJ81_RS01620 (LVJ81_01620)	pilG	351974..353203 (+)	1230	WP_019957100.1	type II secretion system F family protein	Machinery gene
LVJ81_RS01625 (LVJ81_01625)	pilD	353206..354090 (+)	885	WP_019957101.1	A24 family peptidase	Machinery gene
LVJ81_RS01630 (LVJ81_01630)	coaE	354087..354689 (+)	603	WP_019957102.1	dephospho-CoA kinase	-
LVJ81_RS01635 (LVJ81_01635)	zapD	354698..355486 (+)	789	WP_019957103.1	cell division protein ZapD	-
LVJ81_RS01640 (LVJ81_01640)	yacG	355474..355662 (+)	189	WP_019957104.1	DNA gyrase inhibitor YacG	-
LVJ81_RS01645 (LVJ81_01645)	-	355779..358595 (+)	2817	WP_019957105.1	valine--tRNA ligase	-
LVJ81_RS01650 (LVJ81_01650)	-	358685..358969 (-)	285	WP_019957106.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

Download Length: 294 a.a. Molecular weight: 32678.28 Da Isoelectric Point: 7.9542

                                >NTDB_id=651903 LVJ81_RS01625 WP_019957101.1 353206..354090(+) (pilD) [Vitreoscilla stercoraria strain SAG 1488-6]

MMNNLSLEFWLPVCLVLGLLVGSFLNVVIYRVPEGLNRSWRTQAKQMLDMPLEPIDEERFNIMTPPSHCPKCKSPVKPWQ

NIPIVSYILLKGQCKHCDQPISKRYPLVELLTGLVFAVCAWKFGVTWTAVGAMLLSAYLIAMIFIDADTQLLPDQLTLPL

MWAGIVFHLLAEVLQGAWGITTLVDSVMGAVVGYMSLWTIFQLFKLVTGKEGMGYGDFKLLAALGAWIGVGMLPIVIVMS

SLVGLIFAVIMNVAKSQPMPFGPYLAISGWLVLIFSHPITQFIQWWLAKSGFVA

Nucleotide

Download Length: 885 bp

                                >NTDB_id=651903 LVJ81_RS01625 WP_019957101.1 353206..354090(+) (pilD) [Vitreoscilla stercoraria strain SAG 1488-6]

ATGATGAATAATTTATCATTAGAGTTTTGGTTGCCTGTTTGCTTGGTATTGGGTTTGCTGGTTGGCAGTTTTTTGAACGT

GGTGATTTATCGTGTGCCTGAGGGCTTAAATCGCTCTTGGCGCACACAGGCCAAGCAAATGTTGGACATGCCTTTAGAAC

CTATCGATGAGGAGCGTTTCAATATCATGACGCCGCCTTCTCATTGCCCTAAATGCAAAAGCCCTGTAAAGCCTTGGCAA

AATATTCCGATTGTCAGTTACATTTTGCTCAAAGGGCAATGCAAACACTGTGACCAACCTATTTCCAAGCGTTATCCTTT

GGTAGAGTTATTAACGGGCTTGGTATTTGCGGTTTGTGCATGGAAGTTTGGTGTCACATGGACGGCAGTTGGTGCAATGT

TGTTGAGCGCTTATTTGATTGCGATGATTTTCATTGATGCTGACACGCAATTATTGCCTGATCAATTGACTTTGCCTTTG

ATGTGGGCAGGTATCGTGTTTCATTTGTTGGCTGAAGTTTTACAGGGCGCTTGGGGTATCACGACATTGGTAGACTCTGT

AATGGGCGCTGTGGTGGGTTATATGTCGTTGTGGACCATCTTCCAGTTGTTTAAATTGGTCACAGGCAAAGAAGGCATGG

GTTATGGGGATTTCAAGTTACTGGCCGCTTTGGGTGCTTGGATAGGCGTGGGCATGTTGCCGATTGTGATTGTGATGTCA

TCGTTGGTAGGTTTGATTTTTGCGGTCATTATGAATGTCGCGAAAAGCCAGCCTATGCCTTTTGGTCCATATCTGGCGAT

TTCAGGTTGGTTGGTATTGATATTTAGCCATCCCATCACACAATTTATCCAATGGTGGTTAGCCAAATCAGGATTTGTCG

CATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(16-123)

Type IV leader peptidase family (Peptidase_A24)

(133-248)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2L0PNS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Neisseria gonorrhoeae MS11	50.69	98.639	0.5
pilD	Vibrio cholerae strain A1552	48.561	94.558	0.459
pilD	Vibrio campbellii strain DS40M4	46.975	95.578	0.449
pilD	Acinetobacter nosocomialis M2	45.07	96.599	0.435
pilD	Acinetobacter baumannii D1279779	45.926	91.837	0.422

Detailed information NTG0651903