Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   LVJ86_RS00575 Genome accession   NZ_CP091510
Coordinates   130971..132212 (-) Length   413 a.a.
NCBI ID   WP_047760858.1    Uniprot ID   A0A0J0YSJ1
Organism   Neisseria arctica strain KH1503     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125971..137212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS00540 (LVJ86_00540) - 126235..127179 (+) 945 WP_047760852.1 ABC transporter ATP-binding protein -
  LVJ86_RS00545 (LVJ86_00545) - 127295..127750 (-) 456 WP_047760853.1 pilin -
  LVJ86_RS00555 (LVJ86_00555) yacG 128530..128712 (-) 183 WP_047760854.1 DNA gyrase inhibitor YacG -
  LVJ86_RS00560 (LVJ86_00560) zapD 128728..129492 (-) 765 WP_047760855.1 cell division protein ZapD -
  LVJ86_RS00565 (LVJ86_00565) coaE 129489..130109 (-) 621 WP_047760856.1 dephospho-CoA kinase -
  LVJ86_RS00570 (LVJ86_00570) pilD 130106..130969 (-) 864 WP_047760857.1 A24 family peptidase Machinery gene
  LVJ86_RS00575 (LVJ86_00575) pilG 130971..132212 (-) 1242 WP_047760858.1 type II secretion system F family protein Machinery gene
  LVJ86_RS00580 (LVJ86_00580) pilF 132223..133905 (-) 1683 WP_047760859.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ86_RS00585 (LVJ86_00585) - 134134..135201 (-) 1068 WP_082131251.1 RnfABCDGE type electron transport complex subunit B -
  LVJ86_RS00590 (LVJ86_00590) - 135141..136169 (-) 1029 WP_047760887.1 lysozyme inhibitor LprI family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45726.87 Da        Isoelectric Point: 10.1299

>NTDB_id=651847 LVJ86_RS00575 WP_047760858.1 130971..132212(-) (pilG) [Neisseria arctica strain KH1503]
MSQNQKKSSIFTARTKGKRFSFEGKNTHTDQLVRGEVAAKDEDEARKKLQRRGIKPIRISKVKEVRKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHANPAMTQMLMQIRAEVEQGSSLSRAFAKHPKYFDRFYCNLIAAGETGGVLEGLLDKL
ALYKEKTQAIKRKVKSALTYPVAVVTVAIALIIIMMMFVLPAFKEIYSNMGAELPGLTLIMMSISDFFVAYGWLIILGII
AGIFILYKFHERSPSFQKRVDTLLLRLPIFGIIVRKATIARWARTTSTLFAAGVPLVEALDSVAGAAGNILYEEGTQNIR
AKVNQGLSLTSSMQATDLFPNMVLQMASIGEESGSLDDMLNKAAEFYEDEVDNAVGQLSTLMEPIIMVVLGSIIGVILIA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=651847 LVJ86_RS00575 WP_047760858.1 130971..132212(-) (pilG) [Neisseria arctica strain KH1503]
ATGAGTCAAAACCAAAAAAAGAGCAGCATTTTTACTGCCAGAACCAAGGGAAAGCGTTTTAGCTTTGAAGGGAAAAACAC
CCATACCGACCAACTCGTCCGCGGTGAAGTAGCTGCAAAAGACGAGGATGAAGCACGCAAAAAACTTCAGCGCCGCGGCA
TCAAACCTATCCGTATCAGTAAGGTAAAAGAAGTTAGAAAACGTCGTATTACGCAAGAAGACATCACCGTTTTCACCCGC
CAATTGGCAACCATGATGAAAGCCGGGCTGCCATTAATGCAGGCTTTTGAAATCGTTGCACGCGGCCATGCCAACCCGGC
AATGACCCAAATGCTGATGCAGATACGCGCAGAGGTAGAGCAGGGCAGCTCATTATCCCGTGCATTTGCCAAACATCCGA
AATATTTTGACCGTTTTTACTGTAATCTGATTGCGGCTGGTGAAACAGGTGGGGTGTTGGAAGGCCTGCTGGACAAATTG
GCTTTATATAAAGAAAAAACCCAAGCAATTAAACGTAAAGTTAAAAGTGCTCTTACCTATCCTGTTGCAGTCGTTACGGT
TGCAATTGCCTTAATCATTATTATGATGATGTTTGTGTTACCAGCGTTTAAAGAAATATATAGCAATATGGGAGCTGAGC
TACCCGGATTGACATTGATTATGATGTCTATTTCTGATTTTTTTGTTGCCTATGGCTGGTTAATCATTTTGGGTATCATT
GCAGGTATATTTATTTTATACAAATTTCATGAGCGTTCACCATCATTTCAAAAGCGTGTAGATACCCTACTTTTACGTTT
ACCTATTTTCGGAATCATCGTCCGAAAAGCGACTATCGCACGTTGGGCACGAACTACATCTACTCTTTTCGCTGCAGGGG
TACCACTAGTTGAAGCATTAGATTCTGTAGCAGGGGCTGCCGGTAATATTCTATACGAAGAAGGAACTCAAAATATTCGT
GCCAAAGTTAACCAAGGTTTGTCTCTTACATCCAGCATGCAAGCCACAGACCTCTTTCCAAACATGGTATTACAAATGGC
TTCGATTGGTGAAGAATCCGGCTCTCTTGATGATATGTTGAACAAAGCTGCTGAGTTCTATGAAGATGAAGTAGATAATG
CGGTCGGCCAATTATCTACACTGATGGAACCTATTATTATGGTCGTGTTAGGCTCAATTATCGGCGTAATACTGATTGCC
ATGTATCTACCGTTATTTAATCTTGGTAACGTGGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0YSJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

71.788

96.126

0.69
  pilG Neisseria meningitidis 44/76-A

71.285

96.126

0.685
  pilC Pseudomonas stutzeri DSM 10701

44.231

100

0.446
  pilC Legionella pneumophila strain ERS1305867

45.75

96.852

0.443
  pilC Acinetobacter baylyi ADP1

45.387

97.094

0.441
  pilC Acinetobacter baumannii D1279779

44.888

97.094

0.436
  pilC Vibrio cholerae strain A1552

39.506

98.063

0.387
  pilC Thermus thermophilus HB27

39.691

93.947

0.373
  pilC Vibrio campbellii strain DS40M4

37.5

96.852

0.363