Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LVJ86_RS00570 Genome accession   NZ_CP091510
Coordinates   130106..130969 (-) Length   287 a.a.
NCBI ID   WP_047760857.1    Uniprot ID   -
Organism   Neisseria arctica strain KH1503     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125106..135969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS00540 (LVJ86_00540) - 126235..127179 (+) 945 WP_047760852.1 ABC transporter ATP-binding protein -
  LVJ86_RS00545 (LVJ86_00545) - 127295..127750 (-) 456 WP_047760853.1 pilin -
  LVJ86_RS00555 (LVJ86_00555) yacG 128530..128712 (-) 183 WP_047760854.1 DNA gyrase inhibitor YacG -
  LVJ86_RS00560 (LVJ86_00560) zapD 128728..129492 (-) 765 WP_047760855.1 cell division protein ZapD -
  LVJ86_RS00565 (LVJ86_00565) coaE 129489..130109 (-) 621 WP_047760856.1 dephospho-CoA kinase -
  LVJ86_RS00570 (LVJ86_00570) pilD 130106..130969 (-) 864 WP_047760857.1 A24 family peptidase Machinery gene
  LVJ86_RS00575 (LVJ86_00575) pilG 130971..132212 (-) 1242 WP_047760858.1 type II secretion system F family protein Machinery gene
  LVJ86_RS00580 (LVJ86_00580) pilF 132223..133905 (-) 1683 WP_047760859.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ86_RS00585 (LVJ86_00585) - 134134..135201 (-) 1068 WP_082131251.1 RnfABCDGE type electron transport complex subunit B -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31594.45 Da        Isoelectric Point: 8.6031

>NTDB_id=651846 LVJ86_RS00570 WP_047760857.1 130106..130969(-) (pilD) [Neisseria arctica strain KH1503]
MDWQTFAPFAIPLATLFGLLVGSFLNVVIYRTPIMMEQSWTTFAKEHLSIPLTDEERQPFNLIKPDSRCPKCASPVKAWQ
NIPVISYLLLKGKCHHCHTPISKRYPLVELLTAALFATVAWQYGWSWLTLGGLVFTAFLLALTFIDADTQYLPDQLTLPL
IWLGLLFNLNGAFIPLTSSVLGAVTGYMSLWLLCYLYKIATGKIGIGGGDFKLLAALGAWLGLGVLPVIVFSAALIGIIS
ALITRVSKGQPFAFGPSLAIAGWLVFIFNQPVHTAIEWWLRSSGFTG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=651846 LVJ86_RS00570 WP_047760857.1 130106..130969(-) (pilD) [Neisseria arctica strain KH1503]
ATGGATTGGCAAACTTTTGCACCTTTCGCCATCCCATTGGCAACCCTATTCGGCCTGCTAGTCGGAAGTTTTTTGAATGT
TGTGATTTACCGTACCCCTATCATGATGGAGCAGAGCTGGACTACATTTGCAAAAGAGCATTTGAGTATTCCTCTAACCG
ATGAAGAACGGCAACCCTTTAATCTGATTAAGCCCGACTCACGCTGCCCTAAATGTGCCTCACCGGTAAAAGCTTGGCAG
AATATTCCCGTTATCAGCTATCTTTTACTGAAAGGAAAATGCCATCATTGCCACACACCAATCAGTAAACGCTATCCGCT
TGTTGAATTGTTAACCGCCGCATTATTTGCCACCGTCGCTTGGCAATATGGTTGGAGTTGGCTCACATTAGGCGGCTTGG
TTTTCACTGCATTTTTATTAGCACTAACCTTTATTGATGCAGATACCCAATATTTGCCGGATCAGCTGACCCTGCCACTC
ATTTGGCTTGGGCTTTTATTCAACCTAAATGGTGCTTTTATCCCCCTTACCTCCTCAGTTTTAGGGGCAGTAACAGGTTA
TATGAGCTTATGGCTGCTGTGCTACCTATATAAAATAGCGACCGGAAAAATCGGTATAGGCGGCGGTGATTTCAAATTAT
TGGCTGCACTAGGCGCATGGCTGGGCTTAGGCGTCTTACCCGTCATTGTATTCTCAGCAGCGCTTATTGGCATTATCAGC
GCACTAATCACGCGTGTTTCGAAAGGCCAACCTTTTGCTTTCGGACCAAGCTTGGCAATTGCAGGCTGGTTGGTTTTTAT
ATTTAACCAACCAGTACACACAGCCATCGAATGGTGGTTGCGCTCCTCCGGATTTACAGGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(16-123)

Type IV leader peptidase family (Peptidase_A24)

(133-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

66.667

97.213

0.648
  pilD Vibrio cholerae strain A1552

47.423

100

0.481
  pilD Acinetobacter baumannii D1279779

49.81

91.638

0.456
  pilD Vibrio campbellii strain DS40M4

46.931

96.516

0.453
  pilD Acinetobacter nosocomialis M2

49.049

91.638

0.449