Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   LVJ83_RS02990 Genome accession   NZ_CP091508
Coordinates   660564..661802 (+) Length   412 a.a.
NCBI ID   WP_244786181.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 655564..666802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS02965 (LVJ83_02965) - 655688..656266 (-) 579 WP_244786172.1 DUF4126 domain-containing protein -
  LVJ83_RS02970 (LVJ83_02970) - 656407..656892 (-) 486 WP_244786174.1 hypothetical protein -
  LVJ83_RS02975 (LVJ83_02975) - 657148..657828 (-) 681 WP_244786176.1 isochorismatase family protein -
  LVJ83_RS02985 (LVJ83_02985) pilF 658868..660547 (+) 1680 WP_244786178.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ83_RS02990 (LVJ83_02990) pilG 660564..661802 (+) 1239 WP_244786181.1 type II secretion system F family protein Machinery gene
  LVJ83_RS02995 (LVJ83_02995) pilD 661805..662665 (+) 861 WP_244787618.1 A24 family peptidase Machinery gene
  LVJ83_RS03000 (LVJ83_03000) coaE 662667..663281 (+) 615 WP_244786183.1 dephospho-CoA kinase -
  LVJ83_RS03005 (LVJ83_03005) zapD 663286..664053 (+) 768 WP_244787620.1 cell division protein ZapD -
  LVJ83_RS03010 (LVJ83_03010) yacG 664057..664248 (+) 192 WP_244787622.1 DNA gyrase inhibitor YacG -
  LVJ83_RS03015 (LVJ83_03015) - 664559..664720 (+) 162 WP_244786185.1 hypothetical protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45588.92 Da        Isoelectric Point: 10.4097

>NTDB_id=651774 LVJ83_RS02990 WP_244786181.1 660564..661802(+) (pilG) [Uruburuella testudinis strain CCUG 63373m]
MNQAKAGSRLVRKDKGRRFNFEGKNTNTDQIVRGEVIAKDEEEARKKLQRRGIRPLRVSKVKTVRKRRITQGDITVFTRQ
LATMMKAGLPLMQAFELVARGHVNPAMTQLLMQVRADVEQGSALGKAFAKHPKYFDRFYCNLISAGETGGVLESLLDKLA
VYKEKTQAIKKKIKSVLAYPIAIIVVAVALIMVMMMFVLPAFKKVYGNMGAELPWLTQIVMNISDFFVRYGWAMIIGMIV
LVFVLYKTHQRSPGFQKRADGLLLRLPIFGAIVRKAIIARWSRTTATLFAAGVPLVEALDSVAGAAGNILYEEATQDIRS
KVTQGLSLTSSMQGTDMFPNMVLQMASIGEESGSLDDMLNKAAEFYEDEVDNSIAQLSSLMEPVIMVVLGVIIGVLLVAM
YLPLFNLGSVVG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=651774 LVJ83_RS02990 WP_244786181.1 660564..661802(+) (pilG) [Uruburuella testudinis strain CCUG 63373m]
ATGAATCAGGCGAAAGCGGGCAGCCGCTTGGTCAGAAAAGACAAGGGCAGGCGTTTTAATTTTGAAGGCAAAAATACCAA
CACCGATCAAATCGTGCGCGGTGAGGTGATTGCAAAAGACGAAGAAGAGGCGCGTAAAAAATTACAGCGGCGCGGCATCC
GCCCTCTGCGGGTGAGTAAGGTAAAAACCGTACGCAAGCGCCGTATCACACAGGGCGACATCACAGTATTCACCCGCCAG
CTTGCCACCATGATGAAGGCCGGCCTGCCGCTGATGCAGGCGTTTGAACTGGTGGCGCGCGGCCATGTCAACCCGGCGAT
GACACAGCTTCTGATGCAGGTGCGTGCCGATGTAGAGCAGGGCAGTGCATTGGGCAAGGCTTTTGCCAAGCATCCTAAAT
ATTTCGACCGTTTTTACTGCAACCTGATTTCTGCCGGCGAAACCGGCGGGGTATTGGAAAGCCTGCTCGACAAATTGGCG
GTTTACAAAGAGAAAACTCAAGCCATCAAGAAAAAAATCAAAAGCGTGCTGGCTTATCCGATTGCCATTATTGTGGTGGC
GGTTGCCCTGATTATGGTGATGATGATGTTTGTTTTGCCGGCTTTTAAAAAGGTGTACGGCAATATGGGTGCAGAATTGC
CTTGGTTGACGCAAATTGTGATGAATATTTCGGATTTCTTCGTGCGCTACGGCTGGGCGATGATTATCGGTATGATTGTG
TTGGTTTTTGTGTTGTATAAAACACATCAGCGCTCGCCCGGGTTTCAAAAACGGGCAGACGGCCTGTTGCTGAGGCTGCC
GATTTTTGGTGCGATTGTCAGAAAAGCCATTATCGCCCGCTGGTCGCGCACCACCGCCACCTTGTTTGCGGCCGGGGTGC
CGCTGGTTGAGGCGCTCGATTCAGTGGCCGGCGCTGCGGGTAATATTCTGTATGAAGAAGCCACGCAGGATATCCGCTCG
AAAGTTACCCAAGGCTTATCGCTCACTTCCAGTATGCAGGGCACCGATATGTTTCCGAATATGGTGCTTCAGATGGCCTC
GATTGGCGAAGAATCCGGCTCGCTTGACGATATGCTCAACAAGGCCGCCGAATTTTACGAAGACGAAGTGGATAATTCGA
TTGCCCAGCTTTCTTCCTTGATGGAGCCGGTTATTATGGTGGTGTTGGGCGTGATTATCGGCGTGTTGCTGGTGGCCATG
TATCTGCCGCTGTTTAACTTGGGCAGTGTGGTGGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

67.892

99.029

0.672
  pilG Neisseria meningitidis 44/76-A

67.402

99.029

0.667
  pilC Acinetobacter baumannii D1279779

46.231

96.602

0.447
  pilC Legionella pneumophila strain ERS1305867

45.477

96.602

0.439
  pilC Pseudomonas stutzeri DSM 10701

44.888

97.33

0.437
  pilC Acinetobacter baylyi ADP1

45.226

96.602

0.437
  pilC Vibrio cholerae strain A1552

39

97.087

0.379
  pilC Vibrio campbellii strain DS40M4

38.75

97.087

0.376
  pilC Thermus thermophilus HB27

38.875

94.903

0.369