Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LVJ83_RS02995 Genome accession   NZ_CP091508
Coordinates   661805..662665 (+) Length   286 a.a.
NCBI ID   WP_244787618.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 656805..667665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS02975 (LVJ83_02975) - 657148..657828 (-) 681 WP_244786176.1 isochorismatase family protein -
  LVJ83_RS02985 (LVJ83_02985) pilF 658868..660547 (+) 1680 WP_244786178.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ83_RS02990 (LVJ83_02990) pilG 660564..661802 (+) 1239 WP_244786181.1 type II secretion system F family protein Machinery gene
  LVJ83_RS02995 (LVJ83_02995) pilD 661805..662665 (+) 861 WP_244787618.1 A24 family peptidase Machinery gene
  LVJ83_RS03000 (LVJ83_03000) coaE 662667..663281 (+) 615 WP_244786183.1 dephospho-CoA kinase -
  LVJ83_RS03005 (LVJ83_03005) zapD 663286..664053 (+) 768 WP_244787620.1 cell division protein ZapD -
  LVJ83_RS03010 (LVJ83_03010) yacG 664057..664248 (+) 192 WP_244787622.1 DNA gyrase inhibitor YacG -
  LVJ83_RS03015 (LVJ83_03015) - 664559..664720 (+) 162 WP_244786185.1 hypothetical protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 30798.75 Da        Isoelectric Point: 8.9548

>NTDB_id=651775 LVJ83_RS02995 WP_244787618.1 661805..662665(+) (pilD) [Uruburuella testudinis strain CCUG 63373m]
MSGWNMWVPFAVPLAALFGLLVGSFLNVVIYRVPLMMEREWTLFAKTHLGQTPTAAELQPFNLIKPDSCCPQCQSPVRAW
QNIPVISYLLLGGKCGSCKMPISKRYPLVELLTAALFALVAWQYGWSWLTLGGLVLTAMLVALAFIDADTQYLPDQITLP
LLWLGLLFNWNGGMVSLQSAVAGAVAGYLSLWLLCWLYKLATGKIGMGGGDFKLLAALGAWLGIGALPVVVFLAALIGIF
AAAAMRVGKGQQFAFGPSLAVAGWLVFAANQQVAAAIGWWLRASGF

Nucleotide


Download         Length: 861 bp        

>NTDB_id=651775 LVJ83_RS02995 WP_244787618.1 661805..662665(+) (pilD) [Uruburuella testudinis strain CCUG 63373m]
ATGAGCGGATGGAATATGTGGGTGCCCTTTGCCGTGCCGTTGGCTGCTTTGTTCGGCCTGCTGGTGGGCAGTTTTCTGAA
TGTGGTGATTTACCGTGTGCCGCTGATGATGGAGCGGGAATGGACTTTGTTTGCCAAAACGCATTTGGGGCAAACCCCGA
CAGCGGCAGAGTTGCAGCCTTTTAATCTGATTAAGCCTGATTCGTGTTGCCCGCAATGCCAATCGCCGGTGCGCGCTTGG
CAAAATATCCCCGTTATCAGCTATCTGCTGCTCGGCGGCAAATGCGGCAGCTGCAAAATGCCCATCAGCAAACGGTATCC
ATTGGTGGAGCTGCTGACCGCCGCCCTGTTTGCACTGGTGGCGTGGCAATACGGCTGGAGCTGGCTGACTTTGGGCGGCT
TGGTGTTGACCGCAATGCTGGTGGCGCTGGCTTTTATTGATGCAGATACCCAATACCTGCCCGATCAAATCACTCTGCCG
CTGTTGTGGTTGGGTTTGCTGTTTAACTGGAACGGCGGGATGGTGTCGCTGCAATCGGCGGTGGCAGGGGCTGTTGCAGG
TTATCTGAGCTTGTGGCTGCTGTGTTGGCTGTATAAACTGGCAACAGGAAAAATCGGGATGGGCGGCGGTGATTTCAAGC
TGCTGGCGGCTTTGGGCGCCTGGCTCGGCATCGGTGCTTTGCCGGTAGTGGTGTTTTTGGCGGCGCTTATCGGCATTTTT
GCGGCGGCAGCGATGCGTGTGGGCAAAGGGCAGCAGTTTGCTTTCGGCCCCAGCTTGGCTGTGGCCGGCTGGCTGGTGTT
TGCCGCCAATCAACAAGTTGCTGCCGCCATCGGCTGGTGGCTGCGTGCTTCGGGGTTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

69.751

98.252

0.685
  pilD Vibrio cholerae strain A1552

50.362

96.503

0.486
  pilD Vibrio campbellii strain DS40M4

48.315

93.357

0.451
  pilD Acinetobacter baumannii D1279779

49.425

91.259

0.451
  pilD Acinetobacter nosocomialis M2

48.659

91.259

0.444