Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA05_RS19375 Genome accession   NZ_CP108032
Coordinates   4346333..4346932 (+) Length   199 a.a.
NCBI ID   WP_313945053.1    Uniprot ID   A0ACC6PYE6
Organism   Streptomyces sp. NBC_00306     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4341333..4351932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA05_RS19355 (OHA05_19365) - 4342548..4343198 (+) 651 WP_313945056.1 hypothetical protein -
  OHA05_RS19360 (OHA05_19370) - 4343312..4344247 (+) 936 WP_328861272.1 class I SAM-dependent methyltransferase -
  OHA05_RS19365 (OHA05_19375) - 4344915..4345655 (-) 741 WP_328861273.1 SLATT domain-containing protein -
  OHA05_RS19370 (OHA05_19380) - 4345943..4346278 (+) 336 WP_313948929.1 YbaB/EbfC family nucleoid-associated protein -
  OHA05_RS19375 (OHA05_19385) recR 4346333..4346932 (+) 600 WP_313945053.1 recombination mediator RecR Machinery gene
  OHA05_RS19380 (OHA05_19390) - 4346925..4347584 (+) 660 WP_313945052.1 DUF5063 domain-containing protein -
  OHA05_RS19385 (OHA05_19395) - 4347881..4349152 (+) 1272 WP_313945051.1 aspartate kinase -
  OHA05_RS19390 (OHA05_19400) - 4349149..4350249 (+) 1101 WP_328861274.1 aspartate-semialdehyde dehydrogenase -
  OHA05_RS19395 (OHA05_19405) - 4350503..4351165 (+) 663 WP_313945049.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21913.28 Da        Isoelectric Point: 5.1558

>NTDB_id=651764 OHA05_RS19375 WP_313945053.1 4346333..4346932(+) (recR) [Streptomyces sp. NBC_00306]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEQCNICRDPRRDLSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLTRLADGTITELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=651764 OHA05_RS19375 WP_313945053.1 4346333..4346932(+) (recR) [Streptomyces sp. NBC_00306]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCAGAACCGACCGATGTCCGCCGCCTCGCGCACGCGCTGCTCGAGGTGAAGGACAAGGTCC
GCTTCTGCGCGGTGTGCGGCAACGTCGCACAGCAGGAGCAGTGCAACATCTGCCGCGACCCGCGCCGTGACCTGTCGGTC
ATCTGCGTGGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGGGAGTTCCGGGGCCGCTATCACGTACTCGG
CGGGGCCATCAGCCCCATCGAGGGCGTCGGCCCCGACGACCTGCGGATCCGTGAGCTGCTGACCCGCCTGGCGGACGGCA
CGATCACCGAGCTGATCCTGGCCACGGACCCCAATCTGGAGGGCGAGGCCACCGCCACGTATCTGGCGCGCATGATCAAG
CCGATGGGCCTGAAGGTCACCCGGCTGGCCAGTGGTCTGCCCGTGGGGGGAGACTTGGAATACGCCGACGAGGTCACGCT
GGGGCGTGCCTTCGAGGGGAGACGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462