Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   LVJ78_RS11640 Genome accession   NZ_CP091507
Coordinates   2534346..2535584 (+) Length   412 a.a.
NCBI ID   WP_132953497.1    Uniprot ID   -
Organism   Uruburuella suis strain 1258/02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2529346..2540584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS11620 (LVJ78_11620) - 2530051..2530551 (+) 501 WP_132953494.1 DUF4189 domain-containing protein -
  LVJ78_RS11625 (LVJ78_11625) - 2530844..2531497 (-) 654 WP_132953495.1 isochorismatase family protein -
  LVJ78_RS11635 (LVJ78_11635) pilF 2532648..2534330 (+) 1683 WP_132953496.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ78_RS11640 (LVJ78_11640) pilG 2534346..2535584 (+) 1239 WP_132953497.1 type II secretion system F family protein Machinery gene
  LVJ78_RS11645 (LVJ78_11645) pilD 2535586..2536452 (+) 867 WP_132953498.1 A24 family peptidase Machinery gene
  LVJ78_RS11650 (LVJ78_11650) coaE 2536449..2537072 (+) 624 WP_132953499.1 dephospho-CoA kinase -
  LVJ78_RS11655 (LVJ78_11655) zapD 2537069..2537830 (+) 762 WP_132953500.1 cell division protein ZapD -
  LVJ78_RS11660 (LVJ78_11660) yacG 2537835..2538023 (+) 189 WP_132953501.1 DNA gyrase inhibitor YacG -
  LVJ78_RS11665 (LVJ78_11665) - 2538546..2539616 (+) 1071 WP_244802574.1 hypothetical protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45345.35 Da        Isoelectric Point: 10.2083

>NTDB_id=651764 LVJ78_RS11640 WP_132953497.1 2534346..2535584(+) (pilG) [Uruburuella suis strain 1258/02]
MKKNNAGGLFANKNKGKRFNFEGKNTGTDQLVRGEVVAKDEEEARKKLQRRGIKPLRISKVKATRKRRITQADITVFTRQ
LATMMKAGLPLMQAFEIVARGHSNPSMTQMLMQVRSDVEQGSSLGKAFSKHPKYFDRFYCNLIAAGEAGGVLEGLLDKLA
VYKEKTQAIKKKVKSALTYPIAIIVVAVALVLVMMMFVLPAFKEVYSNMGAELPKLTQIIMGFSDFFVSNGWMFIIGMVT
TCVVLYKWHQRSPAFQKRVDAGLLRLPIFGSIVRKATIARWARTTATLFAAGVPLVEALESVAGASGNILYEEATYDIRA
KVTQGLSLTSSMQNTELFPNMVLQMAAIGEESGSLDDMLNKAAEFYEDEVDNAVSQLSSLMEPIIMVVLGSIIGVILVAM
YLPLFNLGSVVG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=651764 LVJ78_RS11640 WP_132953497.1 2534346..2535584(+) (pilG) [Uruburuella suis strain 1258/02]
ATGAAAAAAAATAATGCAGGCGGATTGTTTGCAAACAAAAACAAGGGCAAACGTTTTAATTTCGAGGGCAAAAACACCGG
CACCGACCAACTTGTGCGCGGCGAAGTGGTGGCCAAAGATGAAGAAGAAGCGCGCAAAAAACTGCAACGGCGCGGCATCA
AACCTTTGCGCATCAGCAAGGTAAAAGCCACGCGCAAGCGGCGCATCACCCAAGCCGACATCACCGTGTTTACCCGCCAG
CTCGCCACCATGATGAAAGCCGGCCTGCCGCTGATGCAGGCCTTTGAAATCGTGGCGCGCGGCCACTCCAACCCTTCTAT
GACGCAGATGCTGATGCAGGTGCGGAGCGATGTGGAGCAAGGCAGCTCGCTGGGCAAAGCTTTTTCCAAACACCCCAAAT
ATTTCGACCGCTTCTATTGCAACCTGATTGCCGCCGGTGAGGCCGGCGGTGTATTGGAAGGCTTGCTCGACAAGCTGGCC
GTTTATAAAGAAAAAACCCAAGCCATCAAGAAAAAAGTGAAAAGCGCGCTCACCTACCCCATTGCTATTATCGTGGTGGC
CGTTGCGCTGGTGCTGGTGATGATGATGTTTGTGCTGCCCGCCTTTAAAGAGGTTTACAGCAATATGGGCGCCGAATTGC
CCAAGCTCACCCAAATTATTATGGGCTTTTCCGACTTTTTCGTCAGCAACGGCTGGATGTTTATCATCGGCATGGTCACC
ACTTGCGTGGTGCTGTATAAATGGCACCAACGCTCGCCCGCCTTTCAAAAGCGCGTGGATGCAGGTTTGCTGCGGCTGCC
GATTTTCGGCTCTATCGTGCGCAAAGCCACCATTGCCCGCTGGGCGCGCACCACGGCCACGCTGTTTGCCGCCGGCGTGC
CGCTGGTGGAAGCACTGGAATCGGTGGCCGGCGCATCGGGCAATATTCTGTATGAAGAAGCCACTTACGATATCCGCGCC
AAAGTTACCCAAGGTTTATCGCTCACATCGAGCATGCAAAACACCGAATTATTCCCCAATATGGTTTTGCAGATGGCCGC
CATCGGCGAAGAATCCGGCTCGCTGGACGATATGCTCAATAAAGCCGCCGAATTTTATGAAGACGAAGTGGATAATGCCG
TGTCGCAGCTCTCCTCTTTGATGGAGCCGATTATCATGGTGGTGCTCGGCTCGATTATCGGCGTGATTCTGGTGGCCATG
TATCTGCCCTTGTTCAACCTCGGCAGCGTGGTGGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

71.29

99.757

0.711
  pilG Neisseria meningitidis 44/76-A

70.803

99.757

0.706
  pilC Legionella pneumophila strain ERS1305867

46.985

96.602

0.454
  pilC Acinetobacter baylyi ADP1

44.361

96.845

0.43
  pilC Pseudomonas stutzeri DSM 10701

44.25

97.087

0.43
  pilC Acinetobacter baumannii D1279779

44.472

96.602

0.43
  pilC Vibrio campbellii strain DS40M4

38.806

97.573

0.379
  pilC Vibrio cholerae strain A1552

38.806

97.573

0.379
  pilC Thermus thermophilus HB27

38.363

94.903

0.364