Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LVJ78_RS11645 Genome accession   NZ_CP091507
Coordinates   2535586..2536452 (+) Length   288 a.a.
NCBI ID   WP_132953498.1    Uniprot ID   A0AAE9GX28
Organism   Uruburuella suis strain 1258/02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2530586..2541452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS11625 (LVJ78_11625) - 2530844..2531497 (-) 654 WP_132953495.1 isochorismatase family protein -
  LVJ78_RS11635 (LVJ78_11635) pilF 2532648..2534330 (+) 1683 WP_132953496.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ78_RS11640 (LVJ78_11640) pilG 2534346..2535584 (+) 1239 WP_132953497.1 type II secretion system F family protein Machinery gene
  LVJ78_RS11645 (LVJ78_11645) pilD 2535586..2536452 (+) 867 WP_132953498.1 A24 family peptidase Machinery gene
  LVJ78_RS11650 (LVJ78_11650) coaE 2536449..2537072 (+) 624 WP_132953499.1 dephospho-CoA kinase -
  LVJ78_RS11655 (LVJ78_11655) zapD 2537069..2537830 (+) 762 WP_132953500.1 cell division protein ZapD -
  LVJ78_RS11660 (LVJ78_11660) yacG 2537835..2538023 (+) 189 WP_132953501.1 DNA gyrase inhibitor YacG -
  LVJ78_RS11665 (LVJ78_11665) - 2538546..2539616 (+) 1071 WP_244802574.1 hypothetical protein -
  LVJ78_RS11670 (LVJ78_11670) ftsZ 2539613..2540785 (-) 1173 WP_132953502.1 cell division protein FtsZ -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31160.27 Da        Isoelectric Point: 8.8670

>NTDB_id=651765 LVJ78_RS11645 WP_132953498.1 2535586..2536452(+) (pilD) [Uruburuella suis strain 1258/02]
MMDFNALAPFAIPLAALFGLLVGSFLNVVIYRVPVMMERSWTAFAKEHLGQPLSAEEQQPFNLIKPDSRCPQCQAPVRAW
QNIPVFSYLLLGGKCASCRTPISKRYPLVELLTAALFALVAWQYGWSIITLGGLLFTAMLIALTFIDADTQYLPDQITLP
LIWLGLLFNLNGAFVPLSSAVLGAVFGYMSLWLLCYVYKLLTGKVGMGGGDFKLLAALGAWLGVGVLPVIVFIAALIGVL
AAVLLRVAKGQQFAFGPSLAVAGWLVFIANEKVLAALGWWLRASGFSA

Nucleotide


Download         Length: 867 bp        

>NTDB_id=651765 LVJ78_RS11645 WP_132953498.1 2535586..2536452(+) (pilD) [Uruburuella suis strain 1258/02]
ATGATGGATTTCAATGCCTTAGCACCTTTCGCTATTCCCTTAGCGGCCTTGTTCGGCTTATTGGTGGGCAGCTTTCTCAA
TGTGGTGATTTACCGCGTGCCGGTGATGATGGAGCGCAGCTGGACGGCATTTGCCAAAGAGCATCTCGGCCAACCGCTCA
GCGCCGAAGAGCAGCAGCCTTTCAACCTGATCAAGCCCGATTCGCGCTGCCCGCAATGCCAAGCGCCCGTGCGGGCATGG
CAGAATATTCCCGTGTTCAGCTATCTTTTGCTCGGCGGCAAATGCGCCTCCTGCCGCACACCCATCAGCAAGCGCTATCC
TTTGGTGGAGTTGCTCACCGCCGCTTTATTCGCCCTCGTGGCCTGGCAATACGGCTGGAGCATCATCACGCTGGGCGGCT
TGCTCTTTACCGCCATGCTGATCGCGCTCACCTTTATCGATGCCGACACCCAATACCTACCCGATCAAATCACCTTGCCG
CTGATTTGGCTGGGCTTGCTGTTTAACCTCAACGGCGCTTTTGTGCCGCTTTCTTCTGCCGTGCTCGGCGCCGTGTTCGG
CTACATGAGCTTGTGGCTGCTGTGTTATGTTTACAAGCTGCTCACCGGCAAAGTCGGCATGGGCGGCGGCGATTTCAAAT
TGCTCGCGGCCTTGGGCGCTTGGCTCGGCGTGGGCGTGTTGCCTGTGATTGTTTTTATCGCCGCCCTAATCGGCGTGCTG
GCCGCCGTGCTTTTGCGTGTGGCCAAAGGGCAGCAATTTGCTTTCGGCCCCAGCTTGGCCGTGGCCGGCTGGCTGGTGTT
TATCGCCAATGAAAAAGTGTTGGCCGCGCTGGGCTGGTGGCTGCGTGCATCAGGATTTTCAGCATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

72.242

97.569

0.705
  pilD Vibrio cholerae strain A1552

48.746

96.875

0.472
  pilD Acinetobacter baumannii D1279779

49.049

91.319

0.448
  pilD Vibrio campbellii strain DS40M4

47.925

92.014

0.441
  pilD Acinetobacter nosocomialis M2

47.51

90.625

0.431