Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA05_RS19230 Genome accession   NZ_CP108032
Coordinates   4313153..4313812 (+) Length   219 a.a.
NCBI ID   WP_313945080.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00306     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4308153..4318812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA05_RS19210 (OHA05_19220) kynU 4308464..4309657 (+) 1194 WP_328861256.1 kynureninase -
  OHA05_RS19215 (OHA05_19225) - 4309867..4310736 (+) 870 WP_328861257.1 alpha/beta hydrolase -
  OHA05_RS19220 (OHA05_19230) - 4310863..4311690 (+) 828 WP_313945081.1 NAD(P)H-binding protein -
  OHA05_RS19225 (OHA05_19235) - 4311876..4313156 (+) 1281 WP_313948931.1 histidine kinase -
  OHA05_RS19230 (OHA05_19240) vraR 4313153..4313812 (+) 660 WP_313945080.1 response regulator transcription factor Regulator
  OHA05_RS19235 (OHA05_19245) - 4313909..4315114 (+) 1206 WP_328863423.1 cytochrome P450 -
  OHA05_RS19240 (OHA05_19250) - 4315243..4316859 (-) 1617 WP_328861258.1 ABC transporter permease -
  OHA05_RS19245 (OHA05_19255) - 4316856..4317755 (-) 900 WP_328861259.1 ABC transporter ATP-binding protein -
  OHA05_RS19250 (OHA05_19260) - 4317849..4318355 (+) 507 WP_328861260.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23627.33 Da        Isoelectric Point: 4.8330

>NTDB_id=651763 OHA05_RS19230 WP_313945080.1 4313153..4313812(+) (vraR) [Streptomyces sp. NBC_00306]
MTIRVLVVDDQVMVREGFSVLLNAMPDIEVIGEAVNGREAVSKVAELAPDVVLMDIRMPELNGIEATREIVASHAESKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTRRLITEFSKISQTPKPPALSQVGELTERE
TEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPS

Nucleotide


Download         Length: 660 bp        

>NTDB_id=651763 OHA05_RS19230 WP_313945080.1 4313153..4313812(+) (vraR) [Streptomyces sp. NBC_00306]
ATGACCATCCGGGTCCTTGTCGTCGACGACCAGGTCATGGTCCGTGAAGGCTTCTCCGTCCTGCTGAACGCGATGCCCGA
CATCGAGGTGATCGGCGAGGCGGTCAACGGCCGCGAGGCGGTCTCCAAGGTCGCCGAGCTGGCGCCGGACGTGGTCCTGA
TGGACATCCGTATGCCGGAGCTGAATGGCATCGAGGCCACCCGCGAGATCGTCGCCTCGCACGCGGAGTCGAAGGTGCTC
GTGCTGACCACCTTCGATCTGGACGAGTACGTCTACCAGGCGCTGCGGGCCGGGGCGTCGGGCTTTCTGCTCAAGGACGC
CTCCGCGCGTCAACTGGCCGACGGGGTACGGGTCGTGGCGGCCGGCGAGGCCCTGCTCGCGCCGACCGTGACGCGGCGGC
TGATCACGGAGTTCTCCAAGATCAGCCAGACCCCGAAGCCGCCGGCCCTCTCCCAGGTCGGTGAGCTCACCGAGCGCGAG
ACCGAGGTGCTGGTGCTCATCGCGCAGGGGCTGTCGAACGCGGAGATCGCCTCCCATCTGGTGGTCGCCGAGTCCACGAT
CAAGACGCATGTGAGCCGCGTCCTGGTGAAGCTCGGGCTGCGGGACCGCACCCAGGCGGCGGTGTTCGCGTACGAGGCGA
GGCTGGTCACACCCTCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.444

98.63

0.438
  degU Bacillus subtilis subsp. subtilis str. 168

41.475

99.087

0.411