Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L3V47_RS18925 Genome accession   NZ_CP091480
Coordinates   4130717..4131958 (+) Length   413 a.a.
NCBI ID   WP_021140339.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain ASscau0313     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4125717..4136958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V47_RS18900 (L3V47_18865) ampD 4126051..4126623 (-) 573 WP_277735130.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  L3V47_RS18905 (L3V47_18870) - 4126772..4127242 (+) 471 WP_011898292.1 retropepsin-like aspartic protease family protein -
  L3V47_RS18910 (L3V47_18875) nadC 4127247..4128104 (+) 858 WP_277735131.1 carboxylating nicotinate-nucleotide diphosphorylase -
  L3V47_RS18915 (L3V47_18880) tapA 4128440..4128874 (+) 435 WP_277735133.1 type IVa pilus major pilin TapA -
  L3V47_RS18920 (L3V47_18885) pilB 4128878..4130584 (+) 1707 WP_058394588.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  L3V47_RS18925 (L3V47_18890) pilC 4130717..4131958 (+) 1242 WP_021140339.1 type II secretion system F family protein Machinery gene
  L3V47_RS18930 (L3V47_18895) pilD 4132022..4132897 (+) 876 WP_277735136.1 prepilin peptidase Machinery gene
  L3V47_RS18935 (L3V47_18900) coaE 4132917..4133531 (+) 615 WP_265433253.1 dephospho-CoA kinase -
  L3V47_RS18940 (L3V47_18905) zapD 4133569..4134291 (+) 723 WP_005314166.1 cell division protein ZapD -
  L3V47_RS18945 (L3V47_18910) yacG 4134301..4134495 (+) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  L3V47_RS18950 (L3V47_18915) mutT 4134572..4134979 (-) 408 WP_005314168.1 8-oxo-dGTP diphosphatase MutT -
  L3V47_RS18955 (L3V47_18920) - 4134988..4136172 (-) 1185 WP_277735137.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45325.42 Da        Isoelectric Point: 9.7813

>NTDB_id=651637 L3V47_RS18925 WP_021140339.1 4130717..4131958(+) (pilC) [Aeromonas salmonicida strain ASscau0313]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQDWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=651637 L3V47_RS18925 WP_021140339.1 4130717..4131958(+) (pilC) [Aeromonas salmonicida strain ASscau0313]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTGCAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GAGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACCACAATGCTCTCCGCCGGGGTACCTCTGGTGCAGAGCCTGCAGATCATAGCCCGCAGCCATGAAAAAGCCGC
GATGCGCGAGCTGATGGGCCAGATCGCTGCGGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCGCTCTATTGCGATCTGGTGGAAGCGGGCGAGCAATCCGGCGCGCTGGAAACCATCTACGATCGCATC
GCCACCTATAGAGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCGGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATTTTCAAAAGCTTTGGTGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCCCGCTTCATGCAGGATTGGTGGTATGTGATTTTTGGCGGGATAGGG
CTTGGCATTTTCCTTTATGTACGAGCCTGGCGCGCGTCCCAGAAAGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCTCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TACCCCTGGTGGATGCACTGATCTCGGCCGCTGGAGCCTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGATATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGACT
TGGTCGACGGCCTCACCAGTCTGCTGGAGCCTCTTATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTCGTCGCC
ATGTACCTGCCCATCTTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.645

96.126

0.506
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.287

97.821

0.453
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366