Detailed information NTG0651638

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L3V47_RS18930
• Genome accession: NZ_CP091480
• Coordinates: 4132022..4132897 (+)
• Length: 291 a.a.
• NCBI ID: WP_277735136.1
• Uniprot ID: -
• Organism: Aeromonas salmonicida strain ASscau0313
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4127022..4137897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3V47_RS18910 (L3V47_18875)	nadC	4127247..4128104 (+)	858	WP_277735131.1	carboxylating nicotinate-nucleotide diphosphorylase	-
L3V47_RS18915 (L3V47_18880)	tapA	4128440..4128874 (+)	435	WP_277735133.1	type IVa pilus major pilin TapA	-
L3V47_RS18920 (L3V47_18885)	pilB	4128878..4130584 (+)	1707	WP_058394588.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
L3V47_RS18925 (L3V47_18890)	pilC	4130717..4131958 (+)	1242	WP_021140339.1	type II secretion system F family protein	Machinery gene
L3V47_RS18930 (L3V47_18895)	pilD	4132022..4132897 (+)	876	WP_277735136.1	prepilin peptidase	Machinery gene
L3V47_RS18935 (L3V47_18900)	coaE	4132917..4133531 (+)	615	WP_265433253.1	dephospho-CoA kinase	-
L3V47_RS18940 (L3V47_18905)	zapD	4133569..4134291 (+)	723	WP_005314166.1	cell division protein ZapD	-
L3V47_RS18945 (L3V47_18910)	yacG	4134301..4134495 (+)	195	WP_005314167.1	DNA gyrase inhibitor YacG	-
L3V47_RS18950 (L3V47_18915)	mutT	4134572..4134979 (-)	408	WP_005314168.1	8-oxo-dGTP diphosphatase MutT	-
L3V47_RS18955 (L3V47_18920)	-	4134988..4136172 (-)	1185	WP_277735137.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32485.78 Da
• Isoelectric Point: 7.0169

>NTDB_id=651638 L3V47_RS18930 WP_277735136.1 4132022..4132897(+) (pilD) [Aeromonas salmonicida strain ASscau0313]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSSDTPQPEADERYNLMVPRSCCPHCNH
PITALENIPLLSWLWLKGRCRGCQATISARYPLVELLTALLSVVVAMTLTPGWGTLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNMLGGYVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTIL

Nucleotide

• Length: 876 bp

>NTDB_id=651638 L3V47_RS18930 WP_277735136.1 4132022..4132897(+) (pilD) [Aeromonas salmonicida strain ASscau0313]
ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTATTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATACACCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTATTTCA
GTTCAGACACGCCGCAGCCAGAAGCTGACGAGCGCTACAATCTGATGGTACCGCGCTCCTGCTGCCCTCACTGCAATCAC
CCCATAACGGCACTGGAAAACATACCCCTGCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGGGGCTGCCAGGCCACCAT
TTCGGCTCGCTATCCGCTGGTGGAGCTGCTGACCGCTCTGCTCTCTGTGGTGGTTGCCATGACGCTCACCCCAGGCTGGG
GCACGCTGGCTGCCCTCCTGCTGACCTGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACCTTGCCGCTGCTGTGGGGCGGGCTGCTGTTCAACATGCTGGGCGGATACGTGCCTCTCGGCGATGCGGTCAT
CGGTGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGAGGGCATGGGCT
ATGGGGACTTCAAACTGCTGGCGGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCTGCCCATAGTACTGCTGCTCTCTTCT
CTGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGCAAACCCATCCCCTTTGGCCCCTA
TCTCGCCATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACTATCCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.764	98.969	0.601
pilD	Vibrio campbellii strain DS40M4	55.208	98.969	0.546
pilD	Acinetobacter baumannii D1279779	55.019	92.44	0.509
pilD	Acinetobacter nosocomialis M2	55.019	92.44	0.509
pilD	Neisseria gonorrhoeae MS11	50	92.096	0.46