Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   F779_RS07235 Genome accession   NZ_ANOI01000001
Coordinates   1491213..1491536 (+) Length   107 a.a.
NCBI ID   WP_015729165.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius E140     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486213..1496536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F779_RS07210 - 1486587..1487738 (+) 1152 WP_015729170.1 SNF2-related protein -
  F779_RS07215 - 1487738..1489027 (+) 1290 WP_049770165.1 DUF3440 domain-containing protein -
  F779_RS07220 - 1489021..1489527 (+) 507 WP_198463136.1 ParB/RepB/Spo0J family partition protein -
  F779_RS07225 comGA 1489640..1490164 (+) 525 WP_256726570.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  F779_RS07230 comGB 1490133..1491200 (+) 1068 WP_037542939.1 competence type IV pilus assembly protein ComGB -
  F779_RS07235 comGC 1491213..1491536 (+) 324 WP_015729165.1 competence type IV pilus major pilin ComGC Machinery gene
  F779_RS07240 comGD 1491514..1491954 (+) 441 WP_014613823.1 competence type IV pilus minor pilin ComGD -
  F779_RS13870 - 1492059..1492259 (+) 201 WP_020219623.1 hypothetical protein -
  F779_RS07245 - 1492165..1492650 (+) 486 WP_081378286.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  F779_RS07255 - 1492814..1493341 (+) 528 WP_014613826.1 shikimate kinase -
  F779_RS07260 gcvT 1493499..1494590 (+) 1092 WP_015729161.1 glycine cleavage system aminomethyltransferase GcvT -
  F779_RS07265 gcvPA 1494603..1495952 (+) 1350 WP_014613828.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12027.26 Da        Isoelectric Point: 9.0966

>NTDB_id=65011 F779_RS07235 WP_015729165.1 1491213..1491536(+) (comGC) [Staphylococcus pseudintermedius E140]
MIQQLKLKFNKKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR
EGYIKESQKTCKSGEEITIRDGEAVAS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=65011 F779_RS07235 WP_015729165.1 1491213..1491536(+) (comGC) [Staphylococcus pseudintermedius E140]
ATGATTCAACAACTTAAATTAAAATTCAACAAAAAGAAAGGTTTTACATTAATTGAAATGCTACTTGTTCTGTTAATTAT
TAGTGTACTATTGATTCTCATTATCCCGAATATTGCTAAGCAGTCAGATCATATCCAAAAAACGGGTTGTGCTGCACAAT
TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATTGATGATTTAGTTCGT
GAAGGCTACATTAAAGAAAGTCAAAAAACATGCAAATCAGGTGAAGAGATCACAATCAGAGATGGCGAAGCAGTTGCGTC
ATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

73.529

95.327

0.701
  comGC Staphylococcus aureus N315

73.529

95.327

0.701
  comGC/cglC Streptococcus mitis SK321

44.898

91.589

0.411
  comGC/cglC Streptococcus pneumoniae D39

43.878

91.589

0.402
  comGC/cglC Streptococcus pneumoniae TIGR4

43.878

91.589

0.402
  comGC/cglC Streptococcus pneumoniae Rx1

43.878

91.589

0.402
  comGC/cglC Streptococcus pneumoniae R6

43.878

91.589

0.402
  comYC Streptococcus suis isolate S10

53.846

72.897

0.393
  comYC Streptococcus gordonii str. Challis substr. CH1

49.398

77.57

0.383
  comGC Bacillus subtilis subsp. subtilis str. 168

44.565

85.981

0.383
  comGC/cglC Streptococcus mitis NCTC 12261

48.78

76.636

0.374
  comGC Lactococcus lactis subsp. cremoris KW2

48.78

76.636

0.374

Multiple sequence alignment