Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L2Y54_RS21050 Genome accession   NZ_CP091244
Coordinates   4257672..4258922 (+) Length   416 a.a.
NCBI ID   WP_236498847.1    Uniprot ID   -
Organism   Thiothrix winogradskyi strain CT3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4252672..4263922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y54_RS21040 (L2Y54_21040) - 4254220..4255776 (+) 1557 WP_236498844.1 ATP-binding protein -
  L2Y54_RS21045 (L2Y54_21045) pilB 4255858..4257579 (+) 1722 WP_236498846.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L2Y54_RS21050 (L2Y54_21050) pilC 4257672..4258922 (+) 1251 WP_236498847.1 type II secretion system F family protein Machinery gene
  L2Y54_RS21055 (L2Y54_21055) pilD 4258931..4259806 (+) 876 WP_236498848.1 prepilin peptidase Machinery gene
  L2Y54_RS21060 (L2Y54_21060) - 4259817..4260221 (-) 405 WP_236498850.1 hypothetical protein -
  L2Y54_RS21065 (L2Y54_21065) ubiE 4260303..4261055 (+) 753 WP_236498851.1 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE -
  L2Y54_RS21070 (L2Y54_21070) opgC 4261073..4262248 (-) 1176 WP_236498852.1 OpgC domain-containing protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45478.48 Da        Isoelectric Point: 10.3218

>NTDB_id=648802 L2Y54_RS21050 WP_236498847.1 4257672..4258922(+) (pilC) [Thiothrix winogradskyi strain CT3]
MQSNTLKKPVAGKKPAPSAPQAIYKWEGVNRNGVKMRGETEAVNPNWLRAELRRKGINPGRIYRKPKPLFKPAIKPGDIA
QFARQLTTMMRSGVPMVQSLELMASGGDNASVRELVNKLRADIEGGASLGNALAKHPKYFDKLFVNLVKAGEQAGTLETM
LEKVATYKEKSEALKAKVKSAMMYPIIVVVAAVVVSAILLIWVIPQFKEVFSSFGADLPAFTLLVISFSDWLVANWWQPI
LLFVAIGVSFTQARQRSKAFDRFVDKASLKIPIMGNILNLSAVARFARTLATMFAAGVPLVEAMDSVAGATGNALYEEAS
RRIQDDTARGVQLNTAMQTTQLFPNMMVQMTRIGEESGRLEEMLAKVADYYEAQVDALVDTLAKQIEPLIMAVLGGIVGS
LVIAMYLPIFKLGAVV

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=648802 L2Y54_RS21050 WP_236498847.1 4257672..4258922(+) (pilC) [Thiothrix winogradskyi strain CT3]
ATGCAAAGCAACACCTTGAAAAAGCCGGTAGCAGGCAAAAAACCCGCCCCCAGCGCACCACAAGCCATTTACAAGTGGGA
AGGCGTTAACCGCAATGGCGTAAAAATGCGTGGTGAAACCGAAGCCGTGAATCCCAACTGGTTACGTGCTGAACTGCGGC
GCAAAGGTATTAATCCGGGGCGCATCTACCGCAAACCCAAACCGCTGTTCAAACCCGCGATCAAACCGGGCGATATTGCC
CAATTTGCCCGCCAATTAACCACCATGATGCGGTCTGGTGTGCCAATGGTGCAATCTTTGGAATTAATGGCATCCGGGGG
CGATAATGCCTCAGTACGCGAACTGGTCAATAAATTACGCGCCGACATCGAAGGCGGTGCCAGCTTAGGCAATGCCTTAG
CCAAACACCCCAAATATTTCGACAAATTGTTTGTCAACTTGGTAAAAGCGGGCGAACAAGCCGGTACGCTGGAAACCATG
CTGGAAAAAGTAGCCACCTACAAAGAAAAAAGTGAAGCGCTCAAAGCCAAAGTCAAAAGTGCGATGATGTACCCGATTAT
CGTCGTGGTTGCTGCCGTGGTGGTATCGGCAATCTTGCTGATCTGGGTTATCCCGCAGTTTAAGGAAGTCTTTAGCAGCT
TTGGGGCTGATTTGCCCGCTTTCACCTTGTTGGTTATTTCGTTTTCGGATTGGTTAGTTGCCAACTGGTGGCAACCAATA
CTGCTATTTGTTGCTATCGGGGTTAGTTTTACCCAAGCTCGGCAACGCTCCAAAGCCTTTGACCGCTTCGTGGATAAAGC
GTCGTTAAAGATCCCGATCATGGGGAATATATTGAACTTGTCGGCGGTGGCACGATTTGCGCGTACTCTAGCCACCATGT
TTGCGGCGGGTGTGCCGTTGGTTGAAGCCATGGATTCGGTGGCGGGTGCGACCGGCAATGCCTTGTATGAAGAAGCTTCG
CGGCGAATTCAAGACGATACCGCTCGCGGGGTACAATTGAATACGGCCATGCAAACCACGCAATTATTCCCCAATATGAT
GGTACAAATGACCCGTATCGGTGAAGAATCCGGGCGCTTGGAAGAAATGCTGGCAAAAGTAGCCGATTATTACGAAGCAC
AGGTTGACGCTTTGGTCGATACCTTGGCAAAACAAATTGAACCGCTGATCATGGCGGTACTGGGCGGGATTGTGGGCAGT
TTAGTCATTGCCATGTACCTGCCCATCTTTAAACTTGGGGCTGTTGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)

Type II secretion system (T2SS), protein F (T2SSF)

(82-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.271

95.673

0.519
  pilC Acinetobacter baylyi ADP1

51.005

95.673

0.488
  pilC Legionella pneumophila strain ERS1305867

49.136

97.356

0.478
  pilC Acinetobacter baumannii D1279779

50.126

95.433

0.478
  pilG Neisseria meningitidis 44/76-A

43.325

95.433

0.413
  pilG Neisseria gonorrhoeae MS11

43.073

95.433

0.411
  pilC Vibrio campbellii strain DS40M4

40.447

96.875

0.392
  pilC Vibrio cholerae strain A1552

39.409

97.596

0.385
  pilC Thermus thermophilus HB27

37.221

96.875

0.361