NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	L2Y54_RS21055	Genome accession	NZ_CP091244
Coordinates	4258931..4259806 (+)	Length	291 a.a.
NCBI ID	WP_236498848.1	Uniprot ID	-
Organism	Thiothrix winogradskyi strain CT3
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4253931..4264806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L2Y54_RS21040 (L2Y54_21040)	-	4254220..4255776 (+)	1557	WP_236498844.1	ATP-binding protein	-
L2Y54_RS21045 (L2Y54_21045)	pilB	4255858..4257579 (+)	1722	WP_236498846.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L2Y54_RS21050 (L2Y54_21050)	pilC	4257672..4258922 (+)	1251	WP_236498847.1	type II secretion system F family protein	Machinery gene
L2Y54_RS21055 (L2Y54_21055)	pilD	4258931..4259806 (+)	876	WP_236498848.1	prepilin peptidase	Machinery gene
L2Y54_RS21060 (L2Y54_21060)	-	4259817..4260221 (-)	405	WP_236498850.1	hypothetical protein	-
L2Y54_RS21065 (L2Y54_21065)	ubiE	4260303..4261055 (+)	753	WP_236498851.1	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	-
L2Y54_RS21070 (L2Y54_21070)	opgC	4261073..4262248 (-)	1176	WP_236498852.1	OpgC domain-containing protein	-
L2Y54_RS21075 (L2Y54_21075)	-	4262438..4263964 (+)	1527	WP_236498854.1	glucan biosynthesis protein	-
L2Y54_RS21080 (L2Y54_21080)	-	4264031..4264402 (+)	372	WP_236498855.1	hypothetical protein	-

Sequence

Protein

Download Length: 291 a.a. Molecular weight: 32456.78 Da Isoelectric Point: 7.2990

                                >NTDB_id=648803 L2Y54_RS21055 WP_236498848.1 4258931..4259806(+) (pilD) [Thiothrix winogradskyi strain CT3]

MELIFLLKTSPVWLISVVGLFSLLVGSFLNVVIYRLPIMLERQWKHDCNEWLDQHPDKQDTGDFNLVVPRSQCPTCGHKI

TALENIPVISYLLLRGKCAGCKTPISSQYPLVELATALFSMLVAWRVGYGVELVALLGFTWVLVALFMIDAQTMLLPDIL

TYPLLWAGLLLNISGTFVSLPDAVLGAAFGYLALWSVFHLFRLLTGKEGMGHGDFKLLAALGAWGGWQILPFVIFASSAF

GAIFGILWMLAKGKRESLPMPFGPWLAMAGFVAIVWREEILNWMSKIFMPF

Nucleotide

Download Length: 876 bp

                                >NTDB_id=648803 L2Y54_RS21055 WP_236498848.1 4258931..4259806(+) (pilD) [Thiothrix winogradskyi strain CT3]

ATGGAACTGATTTTTTTACTCAAAACCAGCCCAGTCTGGCTAATAAGTGTCGTGGGGCTATTTTCGCTATTGGTGGGCAG

TTTTCTGAATGTGGTCATTTACCGCCTGCCGATTATGTTAGAACGCCAATGGAAACACGACTGTAACGAATGGCTGGATC

AACACCCTGACAAGCAAGATACCGGCGATTTCAATCTGGTCGTGCCACGCTCACAATGCCCGACCTGTGGGCATAAAATC

ACCGCATTGGAAAACATTCCGGTCATTAGCTACCTATTGCTGCGCGGCAAATGTGCGGGCTGCAAAACCCCGATTTCCAG

CCAATACCCATTGGTGGAACTGGCGACAGCACTGTTTTCCATGCTGGTGGCTTGGCGCGTCGGTTATGGCGTTGAATTAG

TGGCATTGCTCGGCTTTACTTGGGTACTGGTCGCGCTGTTTATGATTGATGCGCAAACCATGCTGCTGCCAGACATTCTC

ACGTATCCGCTGCTGTGGGCGGGTTTGCTGCTCAATATTAGCGGCACGTTTGTCAGTTTGCCAGATGCGGTATTGGGTGC

AGCATTTGGCTATTTGGCGCTCTGGTCAGTGTTTCACCTGTTCCGGCTGTTGACGGGCAAGGAAGGCATGGGGCACGGCG

ATTTCAAATTGCTGGCGGCACTCGGTGCGTGGGGTGGCTGGCAGATTCTGCCGTTCGTGATTTTCGCATCATCGGCGTTT

GGTGCGATATTTGGGATTCTATGGATGCTGGCAAAGGGCAAACGCGAAAGCCTGCCCATGCCATTTGGCCCCTGGCTGGC

AATGGCAGGCTTTGTGGCAATCGTATGGCGCGAGGAAATCCTGAACTGGATGAGCAAGATTTTCATGCCATTCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(139-246)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio campbellii strain DS40M4	52.381	93.814	0.491
pilD	Vibrio cholerae strain A1552	52.015	93.814	0.488
pilD	Neisseria gonorrhoeae MS11	47.445	94.158	0.447
pilD	Acinetobacter baumannii D1279779	47.17	91.065	0.43
pilD	Acinetobacter nosocomialis M2	46.792	91.065	0.426

Detailed information NTG0648803