Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L1O00_RS01915 Genome accession   NZ_CP091140
Coordinates   399127..400368 (-) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain b1-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 394127..405368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O00_RS01890 (L1O00_01890) mutT 396119..396523 (+) 405 WP_278171360.1 8-oxo-dGTP diphosphatase MutT -
  L1O00_RS01895 (L1O00_01895) yacG 396601..396795 (-) 195 WP_069554211.1 DNA gyrase inhibitor YacG -
  L1O00_RS01900 (L1O00_01900) zapD 396805..397527 (-) 723 WP_278171363.1 cell division protein ZapD -
  L1O00_RS01905 (L1O00_01905) coaE 397565..398179 (-) 615 WP_278171366.1 dephospho-CoA kinase -
  L1O00_RS01910 (L1O00_01910) pilD 398193..399065 (-) 873 WP_278171368.1 A24 family peptidase Machinery gene
  L1O00_RS01915 (L1O00_01915) pilC 399127..400368 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  L1O00_RS01920 (L1O00_01920) pilB 400609..402315 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  L1O00_RS01925 - 402315..402737 (-) 423 WP_106843508.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  L1O00_RS01930 (L1O00_01930) nadC 403053..403916 (-) 864 WP_278171372.1 carboxylating nicotinate-nucleotide diphosphorylase -
  L1O00_RS01935 (L1O00_01935) - 403920..404390 (-) 471 WP_278171374.1 retropepsin-like aspartic protease -
  L1O00_RS01940 (L1O00_01940) ampD 404514..405083 (+) 570 WP_278171376.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=647966 L1O00_RS01915 WP_005336136.1 399127..400368(-) (pilC) [Aeromonas veronii strain b1-3]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=647966 L1O00_RS01915 WP_005336136.1 399127..400368(-) (pilC) [Aeromonas veronii strain b1-3]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAAGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAATACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCCCGT
CAGATCACCACTATGCTATCCGCAGGTGTACCGCTGGTGCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAAATTGCCGCCGATGTGGAGACCGGCACTCCCATGTCGGAGGCACTGCGTCGCCATCCTC
TCTATTTCGATGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAGACCATCTACGACCGTATC
GCCACCTATCGGGAAAAGTCGGAAGCACTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTAGT
CGCCATCGTGGTGACCTCCATCCTGCTGCTGTTCGTCATTCCGCAATTCGAGGATATCTTCAAGAGCTTCGGTGCCGAGC
TGCCGGTTTTCACCCAGTTTGTTATTGGTATCTCGCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGCGGTACGGCT
CTTGGCATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTAGTCGGGATGATCCTGCACAAGGCGGCGATGGCCCGCTTTGCACGTACTCTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTAGATGCGCTGATTTCGGCGGCTGGGGCCTCGGGTAACTATGTCTATCGCACCGCGGTCATGGCGATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAACTGGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368