NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	L1O00_RS01910	Genome accession	NZ_CP091140
Coordinates	398193..399065 (-)	Length	290 a.a.
NCBI ID	WP_278171368.1	Uniprot ID	-
Organism	Aeromonas veronii strain b1-3
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 393193..404065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1O00_RS01885 (L1O00_01885)	secA	393324..396044 (+)	2721	WP_278171358.1	preprotein translocase subunit SecA	-
L1O00_RS01890 (L1O00_01890)	mutT	396119..396523 (+)	405	WP_278171360.1	8-oxo-dGTP diphosphatase MutT	-
L1O00_RS01895 (L1O00_01895)	yacG	396601..396795 (-)	195	WP_069554211.1	DNA gyrase inhibitor YacG	-
L1O00_RS01900 (L1O00_01900)	zapD	396805..397527 (-)	723	WP_278171363.1	cell division protein ZapD	-
L1O00_RS01905 (L1O00_01905)	coaE	397565..398179 (-)	615	WP_278171366.1	dephospho-CoA kinase	-
L1O00_RS01910 (L1O00_01910)	pilD	398193..399065 (-)	873	WP_278171368.1	A24 family peptidase	Machinery gene
L1O00_RS01915 (L1O00_01915)	pilC	399127..400368 (-)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
L1O00_RS01920 (L1O00_01920)	pilB	400609..402315 (-)	1707	WP_005336134.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
L1O00_RS01925	-	402315..402737 (-)	423	WP_106843508.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
L1O00_RS01930 (L1O00_01930)	nadC	403053..403916 (-)	864	WP_278171372.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32195.47 Da Isoelectric Point: 6.8283

                                >NTDB_id=647965 L1O00_RS01910 WP_278171368.1 398193..399065(-) (pilD) [Aeromonas veronii strain b1-3]

MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFSPDEEATAPERYNLMVPRSACPHCGHA

ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLTSGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL

VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=647965 L1O00_RS01910 WP_278171368.1 398193..399065(-) (pilD) [Aeromonas veronii strain b1-3]

ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTTTTCTCTCTGATGATCGG

CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCGGCTACTTTT

CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC

ATCACTGCGCTTGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC

GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTATCGGTGGCCGTAGCCATGGTCATAACGCCGGGCTGGGGTA

CGTTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG

CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAACCTGACAAGTGGCTTCGTACCGCTGGCGGATGCCGTGATCGG

TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTAACCGGCAAGGAGGGGATGGGCTATG

GCGACTTCAAGCTGCTGGCGGCACTGGGCGCCTGGCTCGGCTGGCAGGCGCTGCCCATAATTCTGCTTCTCTCATCCCTG

GTCGGCGCAGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT

CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.627	98.966	0.6
pilD	Vibrio campbellii strain DS40M4	55.556	99.31	0.552
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	49.248	91.724	0.452

Detailed information NTG0647965