Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA73_RS38590 Genome accession   NZ_CP107880
Coordinates   8640982..8641680 (+) Length   232 a.a.
NCBI ID   WP_327657459.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00483     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8635982..8646680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA73_RS38570 (OHA73_38570) - 8636483..8637781 (+) 1299 WP_267068113.1 sensor histidine kinase -
  OHA73_RS38575 (OHA73_38575) vraR 8637778..8638440 (+) 663 WP_327657456.1 response regulator transcription factor Regulator
  OHA73_RS38580 (OHA73_38580) - 8638956..8639651 (+) 696 WP_327657457.1 DUF998 domain-containing protein -
  OHA73_RS38585 (OHA73_38585) - 8639681..8640979 (+) 1299 WP_327657458.1 histidine kinase -
  OHA73_RS38590 (OHA73_38590) vraR 8640982..8641680 (+) 699 WP_327657459.1 response regulator transcription factor Regulator
  OHA73_RS38595 (OHA73_38595) - 8642057..8642281 (+) 225 WP_327657460.1 hypothetical protein -
  OHA73_RS38600 (OHA73_38600) - 8642696..8644657 (+) 1962 WP_327657461.1 acyl-CoA dehydrogenase -
  OHA73_RS38605 (OHA73_38605) - 8644673..8645188 (-) 516 WP_327657462.1 SRPBCC family protein -
  OHA73_RS38610 (OHA73_38610) - 8645333..8645890 (+) 558 WP_327658607.1 DNA starvation/stationary phase protection protein -
  OHA73_RS38615 (OHA73_38615) - 8646001..8646444 (+) 444 WP_327657463.1 ATP-binding protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 24922.67 Da        Isoelectric Point: 6.2646

>NTDB_id=647965 OHA73_RS38590 WP_327657459.1 8640982..8641680(+) (vraR) [Streptomyces sp. NBC_00483]
MTITVLIADDQSLVRAGFRSLLRRSRDIDVVGEAASGGEAVQTARALRPDIVLMDIRMPGTDGLTATETITGDPGLAGCR
VIVLTTFETDEYVFAALRAGASGFLSKEIEPEDLRQAIRAVAGGDALLSPSATRRVVEEFAQRPAVTPSVLPDRLAVLTS
REREVVGLVAAGLSNEQIAARLMISPMTAKTHVTRAISKLGVRDRVQLVVLAYETRMIQPGHTVADVLQREH

Nucleotide


Download         Length: 699 bp        

>NTDB_id=647965 OHA73_RS38590 WP_327657459.1 8640982..8641680(+) (vraR) [Streptomyces sp. NBC_00483]
ATGACCATTACGGTGCTGATCGCCGACGACCAGTCCCTGGTGCGGGCCGGATTCCGCAGCCTGCTGCGCAGGAGCCGGGA
CATCGACGTCGTGGGGGAGGCGGCCTCGGGCGGCGAGGCGGTGCAGACCGCGCGCGCCCTGCGCCCGGACATCGTCCTGA
TGGACATCCGGATGCCGGGAACCGACGGGCTGACCGCCACCGAGACCATCACCGGCGATCCGGGCCTGGCCGGATGCCGG
GTCATCGTGCTGACCACCTTCGAGACCGACGAGTACGTGTTCGCCGCGCTGCGCGCCGGGGCCAGCGGCTTCCTCAGCAA
GGAGATCGAGCCGGAAGACCTTCGTCAGGCGATCCGCGCGGTGGCCGGGGGCGATGCGCTGCTGTCGCCGAGCGCGACCC
GCCGGGTGGTCGAGGAGTTCGCGCAGCGGCCCGCCGTGACCCCGTCCGTGCTCCCGGACCGCCTCGCCGTGCTGACGTCC
CGTGAACGCGAGGTGGTGGGCCTGGTCGCGGCCGGACTCTCCAACGAGCAGATCGCCGCGCGGCTCATGATCAGCCCGAT
GACGGCCAAGACCCATGTCACCAGGGCCATTTCCAAGCTGGGTGTCCGCGACCGCGTCCAGCTCGTCGTGCTGGCCTACG
AGACGCGGATGATCCAGCCGGGCCACACCGTGGCCGACGTGCTGCAGCGCGAGCACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.356

94.397

0.362