Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   L1879_RS07775 Genome accession   NZ_CP091131
Coordinates   1620593..1620952 (-) Length   119 a.a.
NCBI ID   WP_013860711.1    Uniprot ID   A0A8B4BV61
Organism   Heyndrickxia coagulans strain TM3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1615593..1625952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1879_RS07745 spoIIID 1616335..1616601 (+) 267 WP_017553086.1 sporulation transcriptional regulator SpoIIID -
  L1879_RS07750 - 1616993..1617994 (+) 1002 WP_017553084.1 rod shape-determining protein -
  L1879_RS07755 - 1618033..1618821 (+) 789 WP_258922235.1 flagellar hook-basal body protein -
  L1879_RS07760 - 1618849..1619679 (+) 831 WP_029142410.1 flagellar hook-basal body protein -
  L1879_RS07765 fabZ 1619810..1620235 (+) 426 WP_019721004.1 3-hydroxyacyl-ACP dehydratase FabZ -
  L1879_RS07770 - 1620422..1620586 (-) 165 WP_013860712.1 hypothetical protein -
  L1879_RS07775 ssbB 1620593..1620952 (-) 360 WP_013860711.1 single-stranded DNA-binding protein Machinery gene
  L1879_RS07780 - 1621302..1621724 (+) 423 WP_013860710.1 YwpF-like family protein -
  L1879_RS07785 - 1621748..1621954 (-) 207 WP_258920948.1 hypothetical protein -
  L1879_RS07790 - 1621982..1622182 (-) 201 WP_235962413.1 hypothetical protein -
  L1879_RS07795 - 1622272..1625073 (-) 2802 WP_258920949.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13456.30 Da        Isoelectric Point: 9.4200

>NTDB_id=647942 L1879_RS07775 WP_013860711.1 1620593..1620952(-) (ssbB) [Heyndrickxia coagulans strain TM3]
MINQVTLVGRLTKDPDLHYTADGKPVLNITLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKDGKRVYVTEVIADTVQFLSKRPENKPLQETGQGG

Nucleotide


Download         Length: 360 bp        

>NTDB_id=647942 L1879_RS07775 WP_013860711.1 1620593..1620952(-) (ssbB) [Heyndrickxia coagulans strain TM3]
TTGATTAACCAGGTCACATTAGTCGGAAGGCTCACAAAAGATCCGGATCTTCACTACACAGCAGACGGAAAACCGGTGCT
AAATATTACGCTTGCCTTAAACCGCCATTACCGGAATCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCGGAGAATACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGCCGGATTCAGACCCGC
CACTATGATAATAAGGACGGAAAAAGGGTCTACGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
GGAAAACAAACCGCTGCAGGAAACCGGCCAGGGAGGGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4BV61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60

92.437

0.555
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.83

89.076

0.471
  ssb Latilactobacillus sakei subsp. sakei 23K

46.552

97.479

0.454
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

90.756

0.412
  ssbB/cilA Streptococcus mitis NCTC 12261

40.678

99.16

0.403
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.678

99.16

0.403
  ssbB/cilA Streptococcus pneumoniae Rx1

39.831

99.16

0.395
  ssbB/cilA Streptococcus pneumoniae D39

39.831

99.16

0.395
  ssbB/cilA Streptococcus pneumoniae R6

39.831

99.16

0.395
  ssbB/cilA Streptococcus mitis SK321

39.831

99.16

0.395
  ssbA Streptococcus mutans UA159

40.741

90.756

0.37