Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L1S45_RS02580 Genome accession   NZ_CP091091
Coordinates   541372..542613 (-) Length   413 a.a.
NCBI ID   WP_005305649.1    Uniprot ID   K1JJY1
Organism   Aeromonas dhakensis strain b2-100     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 536372..547613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1S45_RS02550 (L1S45_02550) - 537218..538396 (+) 1179 WP_252603444.1 tetratricopeptide repeat protein -
  L1S45_RS02555 (L1S45_02555) mutT 538405..538818 (+) 414 WP_026141640.1 8-oxo-dGTP diphosphatase MutT -
  L1S45_RS02560 (L1S45_02560) yacG 538879..539073 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  L1S45_RS02565 (L1S45_02565) zapD 539083..539805 (-) 723 WP_025202564.1 cell division protein ZapD -
  L1S45_RS02570 (L1S45_02570) coaE 539843..540457 (-) 615 WP_252603446.1 dephospho-CoA kinase -
  L1S45_RS02575 (L1S45_02575) pilD 540477..541349 (-) 873 WP_024943109.1 A24 family peptidase Machinery gene
  L1S45_RS02580 (L1S45_02580) pilC 541372..542613 (-) 1242 WP_005305649.1 type II secretion system F family protein Machinery gene
  L1S45_RS02585 (L1S45_02585) pilB 542729..544435 (-) 1707 WP_065017268.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  L1S45_RS02590 (L1S45_02590) tapA 544439..544867 (-) 429 WP_252603448.1 type IVa pilus major pilin TapA -
  L1S45_RS02595 (L1S45_02595) nadC 545189..546046 (-) 858 WP_252603451.1 carboxylating nicotinate-nucleotide diphosphorylase -
  L1S45_RS02600 (L1S45_02600) - 546052..546522 (-) 471 WP_043171614.1 retropepsin-like aspartic protease -
  L1S45_RS02605 (L1S45_02605) ampD 546646..547218 (+) 573 WP_017784976.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45440.57 Da        Isoelectric Point: 9.8734

>NTDB_id=647593 L1S45_RS02580 WP_005305649.1 541372..542613(-) (pilC) [Aeromonas dhakensis strain b2-100]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=647593 L1S45_RS02580 WP_005305649.1 541372..542613(-) (pilC) [Aeromonas dhakensis strain b2-100]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACGGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAAGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATTGCCGTTGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCTCGCAGCCACGAGAAAGCGGC
CATGCGCGAGCTGATGGGTCAGATAGCCGCCGATGTGGAGACCGGTACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAGACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACCATGGTCATCTTGGT
CGCCATTGTCGTCACCTCCATTCTGCTGCTGTTCGTCATTCCGCAGTTTGAGGACATCTTCAAGAGCTTCGGCGCCGAAC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTCCTCTACGTGCGAGCCTGGCGTGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCAATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K1JJY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.576

95.884

0.552
  pilC Acinetobacter baumannii D1279779

54.25

96.852

0.525
  pilC Legionella pneumophila strain ERS1305867

51.605

98.063

0.506
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Vibrio cholerae strain A1552

47.99

96.368

0.462
  pilC Vibrio campbellii strain DS40M4

47.355

96.126

0.455
  pilG Neisseria meningitidis 44/76-A

40.494

98.063

0.397
  pilG Neisseria gonorrhoeae MS11

40.494

98.063

0.397
  pilC Thermus thermophilus HB27

38

96.852

0.368