Detailed information NTG0647592

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L1S45_RS02575
• Genome accession: NZ_CP091091
• Coordinates: 540477..541349 (-)
• Length: 290 a.a.
• NCBI ID: WP_024943109.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain b2-100
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 535477..546349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1S45_RS02550 (L1S45_02550)	-	537218..538396 (+)	1179	WP_252603444.1	tetratricopeptide repeat protein	-
L1S45_RS02555 (L1S45_02555)	mutT	538405..538818 (+)	414	WP_026141640.1	8-oxo-dGTP diphosphatase MutT	-
L1S45_RS02560 (L1S45_02560)	yacG	538879..539073 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
L1S45_RS02565 (L1S45_02565)	zapD	539083..539805 (-)	723	WP_025202564.1	cell division protein ZapD	-
L1S45_RS02570 (L1S45_02570)	coaE	539843..540457 (-)	615	WP_252603446.1	dephospho-CoA kinase	-
L1S45_RS02575 (L1S45_02575)	pilD	540477..541349 (-)	873	WP_024943109.1	A24 family peptidase	Machinery gene
L1S45_RS02580 (L1S45_02580)	pilC	541372..542613 (-)	1242	WP_005305649.1	type II secretion system F family protein	Machinery gene
L1S45_RS02585 (L1S45_02585)	pilB	542729..544435 (-)	1707	WP_065017268.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
L1S45_RS02590 (L1S45_02590)	tapA	544439..544867 (-)	429	WP_252603448.1	type IVa pilus major pilin TapA	-
L1S45_RS02595 (L1S45_02595)	nadC	545189..546046 (-)	858	WP_252603451.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32507.89 Da
• Isoelectric Point: 6.7410

>NTDB_id=647592 L1S45_RS02575 WP_024943109.1 540477..541349(-) (pilD) [Aeromonas dhakensis strain b2-100]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWALLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=647592 L1S45_RS02575 WP_024943109.1 540477..541349(-) (pilD) [Aeromonas dhakensis strain b2-100]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCTGAGACACAACTGCAGCAGGAGGAACGCTACAACCTGATGGTGCCGCGTTCCGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGCTGACAGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCCCACCGGGCTGGGCTT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCATTGCTGTGGGGCGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCAGCGCTGGGGGCCTGGCTCGGCTGGCAGGCCCTGCCCATCGTGTTACTGCTCTCCTCCCTG
GTCGGCGCCATCATAGGGATAAGTCTCATCCTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTCGGGCCCTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	62.238	98.621	0.614
pilD	Vibrio campbellii strain DS40M4	58.478	99.655	0.583
pilD	Acinetobacter baumannii D1279779	54.577	97.931	0.534
pilD	Acinetobacter nosocomialis M2	54.577	97.931	0.534
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462