Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SPYOHK_RS08530 Genome accession   NZ_AFRY01000001
Coordinates   111986..112381 (+) Length   131 a.a.
NCBI ID   WP_002987809.1    Uniprot ID   Q1JNV8
Organism   Streptococcus pyogenes HKU QMH11M0907901     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 106986..117381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYOHK_RS08560 (SPYOHK_00460) - 107851..108159 (+) 309 WP_002987795.1 hypothetical protein -
  SPYOHK_RS08555 (SPYOHK_00465) proC 108242..109012 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  SPYOHK_RS08550 (SPYOHK_00470) pepA 109060..110127 (-) 1068 WP_002987798.1 glutamyl aminopeptidase -
  SPYOHK_RS08545 (SPYOHK_00475) - 110592..110873 (+) 282 WP_024623420.1 DUF4651 domain-containing protein -
  SPYOHK_RS08540 (SPYOHK_00480) - 110873..111190 (+) 318 WP_002987805.1 thioredoxin family protein -
  SPYOHK_RS08535 (SPYOHK_00485) ytpR 111208..111834 (+) 627 WP_002987807.1 YtpR family tRNA-binding protein -
  SPYOHK_RS08530 (SPYOHK_00490) ssbA 111986..112381 (+) 396 WP_002987809.1 single-stranded DNA-binding protein Machinery gene
  SPYOHK_RS08525 (SPYOHK_00495) - 112641..113282 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  SPYOHK_RS08520 (SPYOHK_00500) dusB 113302..114279 (-) 978 WP_002987812.1 tRNA dihydrouridine synthase DusB -
  SPYOHK_RS08515 (SPYOHK_00505) hslO 114266..115138 (-) 873 WP_002987814.1 Hsp33 family molecular chaperone HslO -
  SPYOHK_RS08510 (SPYOHK_00510) rofA 115285..116778 (-) 1494 WP_019418799.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14769.92 Da        Isoelectric Point: 8.0157

>NTDB_id=64643 SPYOHK_RS08530 WP_002987809.1 111986..112381(+) (ssbA) [Streptococcus pyogenes HKU QMH11M0907901]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLISIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=64643 SPYOHK_RS08530 WP_002987809.1 111986..112381(+) (ssbA) [Streptococcus pyogenes HKU QMH11M0907901]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATATCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1JNV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment