Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   L0U97_RS13895 Genome accession   NZ_CP090890
Coordinates   2945207..2947333 (-) Length   708 a.a.
NCBI ID   WP_234857324.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2940207..2952333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS13880 - 2942629..2943507 (-) 879 WP_234856562.1 hypothetical protein -
  L0U97_RS13885 aroB 2943524..2944606 (-) 1083 WP_234856563.1 3-dehydroquinate synthase -
  L0U97_RS13890 aroK 2944627..2945187 (-) 561 WP_234856564.1 shikimate kinase AroK -
  L0U97_RS13895 pilQ 2945207..2947333 (-) 2127 WP_234857324.1 type IV pilus secretin PilQ Machinery gene
  L0U97_RS13900 pilP 2947395..2947922 (-) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  L0U97_RS13905 pilO 2947922..2948662 (-) 741 WP_234856565.1 type 4a pilus biogenesis protein PilO Machinery gene
  L0U97_RS13910 pilN 2948659..2949303 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  L0U97_RS13915 pilM 2949303..2950361 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76925.26 Da        Isoelectric Point: 5.9981

>NTDB_id=646209 L0U97_RS13895 WP_234857324.1 2945207..2947333(-) (pilQ) [Acinetobacter junii strain WCO-9]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQNLKQTSI
PVSTNEASSINVAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPTLISNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTLGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPNKAKPQSYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVTELIKAEEDEAKAIAQSVKLAPLQTEYIQLSYAKAVDIEKLITQGKNGSGNGNRNQGVNDLLGDS
VGSLLSPRGTVSIDPRTNTLIINDTSQKIDQIRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSQGVNKNNDL
LVGGSDTTLWNLREEPNDRGGYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVLTA
DKQAAKIESGTQIPYSSSTGGGANAVPRTEFIDATLSLDVTPSITPEGKVMMKLNITKDSPGTPTPTGQLTINKNTIDTN
VVVDNGETVVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=646209 L0U97_RS13895 WP_234857324.1 2945207..2947333(-) (pilQ) [Acinetobacter junii strain WCO-9]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATTGTGCCGATGAACTTGGGTGATCAGGGTACTGAAATCAGAGTCATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTTGATAAGGCTCAGCAGAACTTAAAGCAAACGTCTATT
CCTGTTTCAACCAATGAGGCAAGTTCAATTAATGTGGCAGCAGATGATCAGCGTGCGCGTTTGATTGTGAATTTAAAAGA
CTCGGGTGCTTTCACAACTCGTGTTGAAGGTAATACTTTTGTTTTAAAAATAAATTCTGCAAAACCAACATTAATCAGTA
ATCCTACGGTTGCTACTCGACAAGTTCAACAAGGTGTTTCCAATATTGGTTTTCAAAGAGGAAATCAAGGTGAGGGGTTA
GTTGTTATTGATCTATTGGGAGGTAATACACCAGTAGATGTACAACAACAGGGGAGTAAAATTGTTGTTCGCACTCTTGG
AAACAAAATCCCAACTCACTTGGCACGTCGTTTAAATACTAATGATTTTGCGACCCCAGTAGCAAGTATTGATGCTTATA
ACGACAAAGGAAATGGGGTTATTACTATTCAATCTGCAGGTAGCTATGAGTACATGGCTTATCAGGCAGAGAACAAACTT
ACAATTAGTTTAAAAAGACCAGAAGATAAGTCACCGAATAAAGCTAAACCACAAAGCTATACTGGAAATAAGATTTCATT
GGATTTCCAAGACATCGAGGTTCGCCGTGTTTTGCAATTATTAGCAGACTTTACGGGAATCAACATGGTTGCTGCTGATA
CTGTACAAGGAAATATAACACTACGTCTTAAAGATGTTCCTTGGGATCAGGCTCTTGATATCGTTTTAAAAACAAAAAAT
TTGGATAAACGTCGTAATGGAAATGTAATTTGGATTGCACCAGTTACGGAGTTGATCAAAGCGGAAGAGGATGAGGCGAA
AGCAATTGCTCAAAGTGTGAAACTTGCACCTTTGCAAACAGAATATATCCAATTGAGTTATGCGAAAGCGGTGGATATTG
AGAAACTCATCACTCAAGGAAAAAATGGCTCTGGTAATGGTAATCGTAATCAGGGAGTTAATGATCTTTTAGGTGATAGT
GTGGGGAGTTTATTGAGCCCACGAGGAACTGTTTCGATTGACCCTCGCACTAATACATTGATTATAAATGATACTTCTCA
GAAAATTGATCAGATTCGTAAGATGATCGACTTGCTTGATGTATCGGTTAAACAAGTCATGATTGAAGCGCGTATTGTGC
GTGCGAGTACAGACTTTACCAAAGAGATGGGTGTAAAGTGGGGGATATTATCACAAGGTGTAAATAAAAATAATGATTTG
CTCGTTGGCGGCAGTGATACAACTTTATGGAATTTGCGAGAAGAACCTAATGATAGAGGGGGGTATGATATTGAACGTCC
AGATAATCTGAATGTGAATTTAGGTGCTGTAACCCCTGGAGCAAGTCGTATTGCTTTTGGTTTAATTAGTCTTTCAGATT
TCATGTTGGACCTAGAGTTGTCGGCTGTTCAGGCTGATGGTTATGGTGAAGTAATCTCAACTCCGAAAGTTCTAACCGCA
GATAAGCAAGCTGCAAAAATTGAATCAGGGACTCAAATTCCATATTCATCTTCTACGGGTGGTGGAGCTAATGCGGTTCC
AAGAACAGAGTTTATTGATGCGACATTAAGTTTGGATGTTACACCGAGTATCACTCCTGAAGGTAAGGTGATGATGAAAT
TAAACATCACCAAAGACTCACCAGGAACGCCAACACCTACAGGGCAGTTGACGATTAATAAAAATACGATTGATACCAAT
GTTGTGGTTGATAATGGTGAAACTGTTGTTCTTGGTGGAATTTTTGAGCAAGAAAATATTAACTCTCAGACCAAAGTTCC
GTTCTTGGGTGATTTACCTTATGTTGGGAAATTATTCCGCAGAGAGTCTAAACAAGACAATAAACGTGAGTTGCTTATTT
TTGTTACGCCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-445)

AMIN domain (AMIN)

(37-122)

Bacterial type II and III secretion system protein (Secretin)

(542-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii strain A118

75.207

100

0.771
  pilQ Acinetobacter baumannii D1279779

75.207

100

0.771
  comQ Acinetobacter baylyi ADP1

73.986

100

0.747
  pilQ Pseudomonas aeruginosa PAK

39.971

98.588

0.394
  pilQ Legionella pneumophila strain ERS1305867

39.435

94.915

0.374
  pilQ Legionella pneumophila strain Lp02

39.254

94.633

0.371