Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   L0U97_RS13900 Genome accession   NZ_CP090890
Coordinates   2947395..2947922 (-) Length   175 a.a.
NCBI ID   WP_004909624.1    Uniprot ID   S7WVB7
Organism   Acinetobacter junii strain WCO-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2942395..2952922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS13880 - 2942629..2943507 (-) 879 WP_234856562.1 hypothetical protein -
  L0U97_RS13885 aroB 2943524..2944606 (-) 1083 WP_234856563.1 3-dehydroquinate synthase -
  L0U97_RS13890 aroK 2944627..2945187 (-) 561 WP_234856564.1 shikimate kinase AroK -
  L0U97_RS13895 pilQ 2945207..2947333 (-) 2127 WP_234857324.1 type IV pilus secretin PilQ Machinery gene
  L0U97_RS13900 pilP 2947395..2947922 (-) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  L0U97_RS13905 pilO 2947922..2948662 (-) 741 WP_234856565.1 type 4a pilus biogenesis protein PilO Machinery gene
  L0U97_RS13910 pilN 2948659..2949303 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  L0U97_RS13915 pilM 2949303..2950361 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19460.68 Da        Isoelectric Point: 9.3195

>NTDB_id=646210 L0U97_RS13900 WP_004909624.1 2947395..2947922(-) (pilP) [Acinetobacter junii strain WCO-9]
MNNYKLLFSFMAGLVLVGCDSKIDAVNQKMAEIRNEPALPIEPAPVFSPVPLFNYSAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALESLNMKGSMRGKTNETIALIQTPDRQIERVQVGNYLGMNQGRVVKISPTQIDLVEIVPDGRDG
YVERPRTLVLIGMAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=646210 L0U97_RS13900 WP_004909624.1 2947395..2947922(-) (pilP) [Acinetobacter junii strain WCO-9]
ATGAATAATTATAAATTATTATTTAGTTTTATGGCTGGGCTTGTTTTGGTTGGGTGTGATTCAAAAATTGACGCTGTAAA
CCAAAAAATGGCTGAAATTCGGAACGAGCCTGCTTTACCTATTGAGCCAGCACCAGTATTTAGTCCCGTACCATTATTTA
ATTATTCAGCACATCAATTGAAAAGTCCATTTATGCCAAGCTCATTGGCGGCTGAGTTGAAAATAATGGCTGGTAAACGC
GTTTATCCAAATTTCAATCGTCAACCGCAACCACTGGAAAGTTATGCGTTGGAATCCCTAAATATGAAGGGTAGCATGCG
TGGTAAAACAAATGAAACGATAGCACTGATTCAGACCCCAGACCGACAAATTGAGCGGGTGCAGGTTGGAAATTACTTAG
GAATGAATCAAGGTCGAGTGGTAAAAATTAGTCCGACTCAAATTGATTTGGTGGAAATTGTACCAGATGGGCGTGATGGT
TATGTGGAGAGACCAAGAACACTCGTTCTAATTGGTATGGCACCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7WVB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

79.532

97.714

0.777
  comL Acinetobacter baylyi ADP1

70.286

100

0.703