Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   L0U97_RS13910 Genome accession   NZ_CP090890
Coordinates   2948659..2949303 (-) Length   214 a.a.
NCBI ID   WP_004909633.1    Uniprot ID   S7WRY4
Organism   Acinetobacter junii strain WCO-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2943659..2954303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS13890 aroK 2944627..2945187 (-) 561 WP_234856564.1 shikimate kinase AroK -
  L0U97_RS13895 pilQ 2945207..2947333 (-) 2127 WP_234857324.1 type IV pilus secretin PilQ Machinery gene
  L0U97_RS13900 pilP 2947395..2947922 (-) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  L0U97_RS13905 pilO 2947922..2948662 (-) 741 WP_234856565.1 type 4a pilus biogenesis protein PilO Machinery gene
  L0U97_RS13910 pilN 2948659..2949303 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  L0U97_RS13915 pilM 2949303..2950361 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  L0U97_RS13920 ponA 2950524..2953103 (+) 2580 WP_234856566.1 penicillin-binding protein PBP1a -
  L0U97_RS13925 - 2953118..2953936 (-) 819 WP_234856567.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23774.17 Da        Isoelectric Point: 5.1372

>NTDB_id=646212 L0U97_RS13910 WP_004909633.1 2948659..2949303(-) (pilN) [Acinetobacter junii strain WCO-9]
MAKINLLPWRDELREQRKKQFIAYCVGVAALGVASVLAGWGYLDYKLNDQEQANQLIVSTNQNLDAQLKSLDGLQERRNA
IIERMKLIQGLQGQRPVAVRLIDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKTVSSLIPRIEENYGSFVVTVDLGEIGTTVEADPLAETVASGTVGAAQ

Nucleotide


Download         Length: 645 bp        

>NTDB_id=646212 L0U97_RS13910 WP_004909633.1 2948659..2949303(-) (pilN) [Acinetobacter junii strain WCO-9]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAACGAAAGAAACAATTTATTGCATATTGTGTAGG
GGTTGCTGCATTAGGTGTGGCATCGGTTTTGGCAGGATGGGGTTATCTTGATTACAAATTAAATGATCAAGAACAAGCGA
ACCAACTGATTGTGAGCACAAATCAAAATCTTGATGCTCAATTAAAATCCTTAGATGGCTTGCAAGAGCGACGTAATGCA
ATTATTGAACGGATGAAACTCATTCAAGGTTTGCAAGGTCAAAGACCTGTCGCTGTACGTTTAATCGATGAATTGGTGCG
AGTTACTCCGCCTACCATGTATTTGACTAAATTTACACGTACGGGAGATAAGTTCACGATTGAAGGGAAAGCTGAAAGTC
CAAACACAGTAGCTGAATTACTGAGAAATCTTGAAGCATCACCTTGGTATCGCAACGCTTTTATGAATTCCTTTTTAGCG
GCTGAAGAGAAAAAAGACAAAACTGTCAGTTCGCTTATACCTCGTATTGAAGAAAACTATGGAAGTTTTGTTGTAACTGT
TGATCTTGGTGAAATAGGTACAACAGTTGAAGCTGACCCATTAGCAGAAACGGTCGCATCAGGAACAGTGGGGGCAGCAC
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7WRY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.636

100

0.766
  comN Acinetobacter baylyi ADP1

73.333

98.131

0.72