Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   L0U97_RS13905 Genome accession   NZ_CP090890
Coordinates   2947922..2948662 (-) Length   246 a.a.
NCBI ID   WP_234856565.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2942922..2953662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS13885 aroB 2943524..2944606 (-) 1083 WP_234856563.1 3-dehydroquinate synthase -
  L0U97_RS13890 aroK 2944627..2945187 (-) 561 WP_234856564.1 shikimate kinase AroK -
  L0U97_RS13895 pilQ 2945207..2947333 (-) 2127 WP_234857324.1 type IV pilus secretin PilQ Machinery gene
  L0U97_RS13900 pilP 2947395..2947922 (-) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  L0U97_RS13905 pilO 2947922..2948662 (-) 741 WP_234856565.1 type 4a pilus biogenesis protein PilO Machinery gene
  L0U97_RS13910 pilN 2948659..2949303 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  L0U97_RS13915 pilM 2949303..2950361 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  L0U97_RS13920 ponA 2950524..2953103 (+) 2580 WP_234856566.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27803.38 Da        Isoelectric Point: 4.6196

>NTDB_id=646211 L0U97_RS13905 WP_234856565.1 2947922..2948662(-) (pilO) [Acinetobacter junii strain WCO-9]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASQDTTKKSDIPVVNYSVKAKTYRYVGADDAVNTEVGAAVPPQNNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=646211 L0U97_RS13905 WP_234856565.1 2947922..2948662(-) (pilO) [Acinetobacter junii strain WCO-9]
ATGAGTCAAGAAGAATTAAATGAACTCAATCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTC
TAGCTGTTTTAGCACTTGGTTACTTTGTTGTTATTAAATCTCAGCTTGAGCGTATTGCTAATGAAGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAAAAAGACTCTAAATTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTACCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACTG
GTGTGAATTCAGGGTTGAAGTTTAAAAACATTCGCTTGGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATTGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACAGGTATTGCGGCATTGCCTCGAATTGTAACTTT
ACACGATTTCACGGTTGAAGCATCACAAGATACGACGAAGAAGTCAGATATTCCTGTTGTGAATTACTCCGTTAAGGCAA
AAACCTACCGTTATGTGGGTGCTGATGATGCAGTAAATACTGAGGTTGGAGCGGCGGTGCCTCCTCAGAATAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.065

100

0.724
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683