Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   L0U97_RS13915 Genome accession   NZ_CP090890
Coordinates   2949303..2950361 (-) Length   352 a.a.
NCBI ID   WP_004951546.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2944303..2955361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS13890 aroK 2944627..2945187 (-) 561 WP_234856564.1 shikimate kinase AroK -
  L0U97_RS13895 pilQ 2945207..2947333 (-) 2127 WP_234857324.1 type IV pilus secretin PilQ Machinery gene
  L0U97_RS13900 pilP 2947395..2947922 (-) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  L0U97_RS13905 pilO 2947922..2948662 (-) 741 WP_234856565.1 type 4a pilus biogenesis protein PilO Machinery gene
  L0U97_RS13910 pilN 2948659..2949303 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  L0U97_RS13915 pilM 2949303..2950361 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  L0U97_RS13920 ponA 2950524..2953103 (+) 2580 WP_234856566.1 penicillin-binding protein PBP1a -
  L0U97_RS13925 - 2953118..2953936 (-) 819 WP_234856567.1 putative RNA methyltransferase -
  L0U97_RS13930 mraY 2953991..2955109 (-) 1119 WP_004909640.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39046.77 Da        Isoelectric Point: 4.5976

>NTDB_id=646213 L0U97_RS13915 WP_004951546.1 2949303..2950361(-) (pilM) [Acinetobacter junii strain WCO-9]
MLRLYRKPNKGLVGVDISSTTVKLLELSVKNGRYWVESYALMPLPENSVVEKSILNPEAVGDALERVVNLANPHTTNVAI
AVPTSMVINKIIEMDADMTDDEREVQIRMDAEQYIPFPLDEVSLDFEVLADRLANPNRVNVLLVATRTENVDSRVEVLEL
AGLKAKIAEVESYAMERAFSVFADTLPMGANTVGILDIGHTMTTLSVMQKGKIIYTREQVFGGKQLTQDVQNRYGLSFEE
AGRAKKERSLPDDYDTEVLEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQIDIKKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=646213 L0U97_RS13915 WP_004951546.1 2949303..2950361(-) (pilM) [Acinetobacter junii strain WCO-9]
GTGCTCAGGTTATATCGTAAACCAAATAAGGGGTTAGTGGGTGTCGATATTAGTTCGACAACTGTTAAGTTATTGGAACT
CTCTGTTAAGAACGGTCGATATTGGGTTGAAAGTTATGCATTGATGCCACTACCTGAAAATAGTGTGGTTGAGAAAAGCA
TTTTAAACCCAGAAGCAGTTGGCGACGCGCTTGAACGAGTTGTTAATCTTGCAAACCCTCACACTACCAATGTGGCTATT
GCTGTGCCTACTTCGATGGTCATTAATAAGATCATCGAGATGGATGCTGACATGACGGATGATGAACGGGAAGTTCAAAT
TCGTATGGATGCAGAGCAATATATTCCATTCCCATTAGATGAAGTTAGTTTGGACTTTGAAGTCTTAGCCGATCGATTGG
CAAATCCTAATCGTGTCAATGTGCTATTAGTCGCTACGCGTACTGAGAATGTTGATTCACGTGTTGAAGTTCTTGAACTA
GCAGGTCTAAAGGCAAAGATTGCTGAAGTCGAAAGTTATGCGATGGAACGTGCTTTTAGTGTATTCGCTGATACGCTACC
TATGGGTGCGAATACAGTGGGTATTCTAGATATTGGGCATACGATGACGACGTTATCGGTCATGCAAAAAGGTAAAATTA
TCTATACTCGTGAGCAAGTGTTTGGTGGAAAACAACTTACTCAAGACGTTCAAAATCGTTATGGTTTATCTTTTGAAGAA
GCTGGTCGAGCTAAAAAAGAAAGAAGTTTGCCAGATGATTACGATACCGAAGTTTTAGAACCATTTCTTGATGCAGTTGT
GCAACAAGCTGCACGTTCGCTGCAATTCTTTTTCTCATCATCTCAATTTAATGAGATTGACCACATCCTGTTAGCAGGTG
GTAATGCCAATATTCCAGGTCTAGCTAAACTGTTGCAACAAAAGCTAGGTTATCGAGTAACGATTGCCAACCCATTTTTA
CAAATGGGCTTTTCTCCCCAAATCGATATCAAAAAAATAGAAAATGATGCCTCATCCTTGATGGTGGCATGTGGATTAGC
ATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

88.352

100

0.884
  comM Acinetobacter nosocomialis M2

88.068

100

0.881
  comM Acinetobacter baylyi ADP1

83.523

100

0.835
  pilM Legionella pneumophila strain ERS1305867

41.525

100

0.418