Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L0U97_RS01760 Genome accession   NZ_CP090890
Coordinates   370209..371438 (-) Length   409 a.a.
NCBI ID   WP_151690733.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 365209..376438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS01730 - 366404..366556 (+) 153 WP_234856789.1 hypothetical protein -
  L0U97_RS01735 - 366592..366918 (+) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  L0U97_RS01740 rlmB 367047..367796 (+) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  L0U97_RS01745 - 367827..368738 (+) 912 WP_234856790.1 DMT family transporter -
  L0U97_RS01750 coaE 368735..369334 (-) 600 WP_234856791.1 dephospho-CoA kinase -
  L0U97_RS01755 pilD 369336..370196 (-) 861 WP_234856792.1 prepilin peptidase Machinery gene
  L0U97_RS01760 pilC 370209..371438 (-) 1230 WP_151690733.1 type II secretion system F family protein Machinery gene
  L0U97_RS01765 pilB 371463..373187 (-) 1725 WP_234856793.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L0U97_RS01770 tpiA 373533..374324 (+) 792 WP_234856794.1 triose-phosphate isomerase -
  L0U97_RS01775 secG 374337..374666 (+) 330 WP_004916847.1 preprotein translocase subunit SecG -
  L0U97_RS01795 rimP 375289..375813 (+) 525 WP_004916844.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44921.35 Da        Isoelectric Point: 9.8960

>NTDB_id=646188 L0U97_RS01760 WP_151690733.1 370209..371438(-) (pilC) [Acinetobacter junii strain WCO-9]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKSEVEGGNTFAGALKKYPQYFDTLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPITVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVGMSQWMQEYWFILIIVIGAIIA
AFLEAKKRSKKFRDGLDKLALRLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNRFPAMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGILVGGLVVAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=646188 L0U97_RS01760 WP_151690733.1 370209..371438(-) (pilC) [Acinetobacter junii strain WCO-9]
ATGGCAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCGAAAGTCACCTTACGTAAACAAGGCGTGACGATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACGACCTTGGATATCACGGTTTTCACACGCCAATTAGCAACA
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTTGCAGAAGGTTTAGAAAACCCCTCCATGCGTGAGGT
CGTACTAGGATTAAAAAGTGAAGTTGAAGGCGGTAATACTTTCGCTGGTGCTTTAAAAAAATATCCTCAATACTTTGATA
CCTTATTTTGCTCACTCGTTGAGTCAGGGGAACAATCTGGCGCACTTGAGACCATGCTAGATCGTGTCGCTGTGTATAAG
GAAAAAAGTGAGCTCCTCAAACAAAAAATTAAAAAGGCAATGAAGTACCCAATTACGGTGATTGTAGTTGCTGTCATCGT
TACAATTATTTTGATGGTGAAAGTGGTCCCAGTTTTCCAAGATCTATTTAGTTCATTTGGTGCAGACTTACCCGCATTTA
CCAAAATGGTTGTCGGCATGTCTCAATGGATGCAAGAATATTGGTTCATTCTGATTATCGTTATTGGTGCAATTATTGCT
GCATTTCTAGAAGCTAAAAAACGTAGTAAAAAATTTAGAGATGGCTTAGATAAACTTGCTTTAAGATTACCTATCTTTGG
TGATCTCGTATACAAAGCAATTATTGCTCGATATAGTCGTACTCTAGCAACGACATTTGCTGCGGGCGTTCCTTTAATCG
ATGCGCTTACATCCACAGCAGGCGCAACCAATAATGTTGTTTATGAAGAAGCCGTACTTAAGATTAGAGAGGATGTTGCG
ACTGGACAACAACTACAATTTGCTATGCGTGTTTCAAACCGCTTCCCTGCGATGGCAATTCAAATGGTCGCCATTGGTGA
AGAGTCTGGTGCACTTGATTCGATGTTAGATAAAGTTGCAACACACTATGAAAATGAGGTCGACAACGCAGTAGATGGTC
TGACTTCGATGATGGAACCATTAATCATGGCAATCCTAGGTATTCTCGTTGGTGGATTAGTTGTCGCTATGTATCTTCCA
ATCTTCCAAATGGGTTCCGTTGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.931

99.756

0.907
  pilC Acinetobacter baylyi ADP1

86.275

99.756

0.861
  pilC Pseudomonas stutzeri DSM 10701

60.345

99.267

0.599
  pilC Legionella pneumophila strain ERS1305867

53.827

99.022

0.533
  pilG Neisseria gonorrhoeae MS11

46.482

97.311

0.452
  pilG Neisseria meningitidis 44/76-A

46.482

97.311

0.452
  pilC Vibrio cholerae strain A1552

41.912

99.756

0.418
  pilC Vibrio campbellii strain DS40M4

39.756

100

0.399
  pilC Thermus thermophilus HB27

37.157

98.044

0.364