Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   L0U97_RS01755 Genome accession   NZ_CP090890
Coordinates   369336..370196 (-) Length   286 a.a.
NCBI ID   WP_234856792.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364336..375196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS01725 recN 364406..366067 (-) 1662 WP_234856788.1 DNA repair protein RecN -
  L0U97_RS01730 - 366404..366556 (+) 153 WP_234856789.1 hypothetical protein -
  L0U97_RS01735 - 366592..366918 (+) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  L0U97_RS01740 rlmB 367047..367796 (+) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  L0U97_RS01745 - 367827..368738 (+) 912 WP_234856790.1 DMT family transporter -
  L0U97_RS01750 coaE 368735..369334 (-) 600 WP_234856791.1 dephospho-CoA kinase -
  L0U97_RS01755 pilD 369336..370196 (-) 861 WP_234856792.1 prepilin peptidase Machinery gene
  L0U97_RS01760 pilC 370209..371438 (-) 1230 WP_151690733.1 type II secretion system F family protein Machinery gene
  L0U97_RS01765 pilB 371463..373187 (-) 1725 WP_234856793.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L0U97_RS01770 tpiA 373533..374324 (+) 792 WP_234856794.1 triose-phosphate isomerase -
  L0U97_RS01775 secG 374337..374666 (+) 330 WP_004916847.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31923.57 Da        Isoelectric Point: 7.8116

>NTDB_id=646187 L0U97_RS01755 WP_234856792.1 369336..370196(-) (pilD) [Acinetobacter junii strain WCO-9]
MLPLFTYFIENPTALYVAVGLISLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHPEQPIIDQSKLTLSQPVSTCPKCQTP
IKWFQNIPLISWLALRGKCGTCKNPISIRYPLIELLTMICSLIVVAVFGATIQMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFAIYTTASAAIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPIMLPLIVLLSSM
VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=646187 L0U97_RS01755 WP_234856792.1 369336..370196(-) (pilD) [Acinetobacter junii strain WCO-9]
ATGCTTCCTTTATTTACTTATTTTATTGAAAATCCAACTGCACTTTACGTTGCAGTTGGATTAATTAGTCTGTGCATCGG
CAGTTTTTTAAATGTTGTGATCTTTCGCACTCCAAAAATGATGGAGCAAGAATGGCATCAAGAATGCCAAATGCTTTTAC
ACCCTGAACAGCCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGTTTCCACCTGTCCTAAGTGTCAAACGCCA
ATTAAATGGTTCCAAAATATTCCTCTTATTAGTTGGTTAGCACTCCGTGGTAAATGTGGCACTTGCAAGAATCCAATTAG
CATTCGCTACCCGTTGATTGAACTACTTACTATGATCTGTTCATTGATCGTTGTGGCAGTATTCGGTGCAACAATTCAGA
TGCTGTTCGGCTTAATTCTAACGTGGACACTGATTGCACTCACTTTTATTGATTTTGATACACAATTACTACCTGATCGA
TTTACGCTACCTTTAGCAGCATTAGGTCTAGGTATTAATACTTTTGCAATCTATACAACGGCTAGTGCTGCGATCTGGGG
CTATTTAATCGGTTTTCTATGTCTATGGATTGTGTATTACCTGTTTAAAATTATCACCGGTAAAGAAGGCATGGGCTATG
GTGATTTTAAATTGCTTGCAGCCCTTGGTGCATGGATGGGTCCGATCATGTTACCCCTCATCGTATTACTCTCTTCTATG
GTAGGCGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGTCCTTATATTGCAAT
TGCCGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTGTATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

81.469

100

0.815
  pilD Acinetobacter baumannii D1279779

81.119

100

0.811
  pilD Vibrio cholerae strain A1552

54.412

95.105

0.517
  pilD Vibrio campbellii strain DS40M4

48.951

100

0.49
  pilD Neisseria gonorrhoeae MS11

45.833

92.308

0.423