Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | L1A17_RS04560 | Genome accession | NZ_CP090886 |
| Coordinates | 887668..888063 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282467.1 | Uniprot ID | A0A098Z0L0 |
| Organism | Streptococcus pneumoniae strain NP7513 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 882668..893063
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1A17_RS04510 (L1A17_04510) | - | 882803..883165 (+) | 363 | WP_000078806.1 | DUF2200 family protein | - |
| L1A17_RS04515 (L1A17_04515) | - | 883162..883665 (+) | 504 | WP_000800942.1 | phosphatase PAP2 family protein | - |
| L1A17_RS04520 (L1A17_04520) | - | 883779..884225 (+) | 447 | WP_000776589.1 | LytTR family DNA-binding domain-containing protein | - |
| L1A17_RS04525 (L1A17_04525) | - | 884231..884905 (+) | 675 | WP_000725739.1 | membrane protein | - |
| L1A17_RS04530 (L1A17_04530) | - | 885066..885257 (+) | 192 | WP_000291826.1 | cell wall-binding protein | - |
| L1A17_RS04535 (L1A17_04535) | - | 885282..885344 (+) | 63 | WP_219300018.1 | hypothetical protein | - |
| L1A17_RS04540 (L1A17_04540) | - | 885542..885841 (+) | 300 | WP_001013972.1 | DUF4651 domain-containing protein | - |
| L1A17_RS04545 (L1A17_04545) | - | 885838..886155 (+) | 318 | WP_000615767.1 | thioredoxin family protein | - |
| L1A17_RS04550 (L1A17_04550) | ytpR | 886171..886797 (+) | 627 | WP_000578309.1 | YtpR family tRNA-binding protein | - |
| L1A17_RS04555 (L1A17_04555) | - | 886830..887591 (+) | 762 | WP_001107771.1 | SDR family oxidoreductase | - |
| L1A17_RS04560 (L1A17_04560) | ssbB/cilA | 887668..888063 (+) | 396 | WP_000282467.1 | single-stranded DNA-binding protein | Machinery gene |
| L1A17_RS04565 (L1A17_04565) | groES | 888333..888617 (+) | 285 | WP_000917330.1 | co-chaperone GroES | - |
| L1A17_RS04570 (L1A17_04570) | groL | 888633..890255 (+) | 1623 | WP_000031573.1 | chaperonin GroEL | - |
| L1A17_RS04575 (L1A17_04575) | - | 890393..891148 (+) | 756 | Protein_876 | epoxyqueuosine reductase QueH | - |
| L1A17_RS04580 (L1A17_04580) | - | 891594..892367 (+) | 774 | WP_000566048.1 | class I SAM-dependent methyltransferase | - |
| L1A17_RS04585 (L1A17_04585) | - | 892380..892718 (+) | 339 | WP_001809290.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14925.89 Da Isoelectric Point: 5.9409
>NTDB_id=645922 L1A17_RS04560 WP_000282467.1 887668..888063(+) (ssbB/cilA) [Streptococcus pneumoniae strain NP7513]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=645922 L1A17_RS04560 WP_000282467.1 887668..888063(+) (ssbB/cilA) [Streptococcus pneumoniae strain NP7513]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTCACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTCACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus mitis SK321 |
98.473 |
100 |
0.985 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
98.473 |
100 |
0.985 |
| ssbA | Streptococcus mutans UA159 |
74.809 |
100 |
0.748 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
70.229 |
100 |
0.702 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
59.821 |
85.496 |
0.511 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.903 |
86.26 |
0.405 |