Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   STRIC_RS08610 Genome accession   NZ_AEUX02000007
Coordinates   177647..178042 (+) Length   131 a.a.
NCBI ID   WP_008090409.1    Uniprot ID   G5K4M6
Organism   Streptococcus ictaluri 707-05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 172647..183042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRIC_RS11600 (STRIC_1756) - 172929..173768 (+) 840 WP_008090293.1 hypothetical protein -
  STRIC_RS08585 (STRIC_1757) proC 173816..174586 (-) 771 WP_008090237.1 pyrroline-5-carboxylate reductase -
  STRIC_RS08590 (STRIC_1758) pepA 174609..175676 (-) 1068 WP_008090390.1 glutamyl aminopeptidase -
  STRIC_RS08595 (STRIC_1760) - 176189..176473 (+) 285 WP_008089864.1 DUF4651 domain-containing protein -
  STRIC_RS08600 (STRIC_1761) - 176470..176787 (+) 318 WP_008089749.1 thioredoxin family protein -
  STRIC_RS08605 (STRIC_1762) ytpR 176806..177432 (+) 627 WP_008090085.1 YtpR family tRNA-binding protein -
  STRIC_RS08610 (STRIC_1763) ssbA 177647..178042 (+) 396 WP_008090409.1 single-stranded DNA-binding protein Machinery gene
  STRIC_RS08615 (STRIC_1764) - 178482..179453 (+) 972 WP_008090185.1 ABC transporter substrate-binding protein -
  STRIC_RS08620 (STRIC_1765) - 179477..180439 (+) 963 WP_008089876.1 ABC transporter substrate-binding protein -
  STRIC_RS08625 (STRIC_1766) - 180507..181391 (+) 885 WP_008089879.1 ABC transporter permease -
  STRIC_RS08630 (STRIC_1767) - 181403..182209 (+) 807 WP_008090205.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14803.96 Da        Isoelectric Point: 7.2033

>NTDB_id=64588 STRIC_RS08610 WP_008090409.1 177647..178042(+) (ssbA) [Streptococcus ictaluri 707-05]
MYNKVIMIGRLVATPELVKTANGKSVTRVTVSINRRYKEASGERAVDFVNVVIWGRLAETLVSYASKGSLISLDGELRTR
KYEKEGQMHYVSEVVVSSFQLLESRAQRAMRENNVAHELADLVLDEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=64588 STRIC_RS08610 WP_008090409.1 177647..178042(+) (ssbA) [Streptococcus ictaluri 707-05]
ATGTATAATAAAGTCATTATGATAGGACGTTTAGTAGCGACTCCAGAGCTAGTTAAAACGGCCAATGGAAAATCCGTTAC
ACGTGTGACTGTTTCCATTAATCGACGCTATAAAGAGGCGTCTGGCGAGCGAGCTGTTGATTTTGTAAACGTAGTTATCT
GGGGACGTTTGGCAGAAACCTTGGTTTCTTATGCTAGTAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGCACGCGC
AAATATGAGAAAGAAGGCCAAATGCATTATGTTTCAGAGGTTGTGGTCTCTTCGTTTCAATTGTTGGAAAGTCGTGCGCA
ACGTGCCATGCGTGAAAATAACGTCGCTCATGAATTAGCCGACTTGGTCTTAGATGAGGAGGAGCTCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K4M6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae D39

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae R6

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae Rx1

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.046

100

0.74
  ssbB/cilA Streptococcus mitis SK321

74.046

100

0.74
  ssbB/cilA Streptococcus mitis NCTC 12261

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

55.263

87.023

0.481
  ssb Latilactobacillus sakei subsp. sakei 23K

42.017

90.84

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.283

80.916

0.366

Multiple sequence alignment