Detailed information NTG0645848

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: L1A16_RS08840
• Genome accession: NZ_CP090885
• Coordinates: 1729163..1729558 (-)
• Length: 131 a.a.
• NCBI ID: WP_000282467.1
• Uniprot ID: A0A098Z0L0
• Organism: Streptococcus pneumoniae strain ND6401
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1724163..1734558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1A16_RS08815 (L1A16_08815)	-	1724508..1724846 (-)	339	WP_001809290.1	helix-turn-helix transcriptional regulator	-
L1A16_RS08820 (L1A16_08820)	-	1724859..1725632 (-)	774	WP_000566048.1	class I SAM-dependent methyltransferase	-
L1A16_RS08825 (L1A16_08825)	-	1726078..1726833 (-)	756	Protein_1744	epoxyqueuosine reductase QueH	-
L1A16_RS08830 (L1A16_08830)	groL	1726971..1728593 (-)	1623	WP_000031573.1	chaperonin GroEL	-
L1A16_RS08835 (L1A16_08835)	groES	1728609..1728893 (-)	285	WP_000917330.1	co-chaperone GroES	-
L1A16_RS08840 (L1A16_08840)	ssbB/cilA	1729163..1729558 (-)	396	WP_000282467.1	single-stranded DNA-binding protein	Machinery gene
L1A16_RS08845 (L1A16_08845)	-	1729635..1730396 (-)	762	WP_001107771.1	SDR family oxidoreductase	-
L1A16_RS08850 (L1A16_08850)	ytpR	1730429..1731055 (-)	627	WP_000578309.1	YtpR family tRNA-binding protein	-
L1A16_RS08855 (L1A16_08855)	-	1731071..1731388 (-)	318	WP_000615767.1	thioredoxin family protein	-
L1A16_RS08860 (L1A16_08860)	-	1731385..1731684 (-)	300	WP_001013972.1	DUF4651 domain-containing protein	-
L1A16_RS08865 (L1A16_08865)	-	1731882..1731962 (-)	81	WP_223200442.1	hypothetical protein	-
L1A16_RS08870 (L1A16_08870)	-	1731969..1732160 (-)	192	WP_000291826.1	cell wall-binding protein	-
L1A16_RS08875 (L1A16_08875)	-	1732321..1732995 (-)	675	WP_000725739.1	membrane protein	-
L1A16_RS08880 (L1A16_08880)	-	1733001..1733447 (-)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
L1A16_RS08885 (L1A16_08885)	-	1733561..1734064 (-)	504	WP_000800942.1	phosphatase PAP2 family protein	-
L1A16_RS08890 (L1A16_08890)	-	1734061..1734423 (-)	363	WP_000078806.1	DUF2200 family protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14925.89 Da
• Isoelectric Point: 5.9409

>NTDB_id=645848 L1A16_RS08840 WP_000282467.1 1729163..1729558(-) (ssbB/cilA) [Streptococcus pneumoniae strain ND6401]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=645848 L1A16_RS08840 WP_000282467.1 1729163..1729558(-) (ssbB/cilA) [Streptococcus pneumoniae strain ND6401]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTCACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

3D structure

• AlphaFold DB: A0A098Z0L0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae D39	100	100	1
ssbB/cilA	Streptococcus pneumoniae Rx1	100	100	1
ssbB/cilA	Streptococcus pneumoniae R6	100	100	1
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	98.473	100	0.985
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405