Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | L0998_RS03900 | Genome accession | NZ_CP090876 |
| Coordinates | 728585..728896 (+) | Length | 103 a.a. |
| NCBI ID | WP_054190026.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SAUR_BFS12 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 723585..733896
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0998_RS03870 (L0998_03870) | - | 724368..724571 (+) | 204 | WP_000087561.1 | YqgQ family protein | - |
| L0998_RS03875 (L0998_03875) | - | 724568..725554 (+) | 987 | WP_000161315.1 | ROK family glucokinase | - |
| L0998_RS03880 (L0998_03880) | - | 725554..725883 (+) | 330 | WP_001018871.1 | MTH1187 family thiamine-binding protein | - |
| L0998_RS03885 (L0998_03885) | - | 725880..726503 (+) | 624 | WP_054190028.1 | MBL fold metallo-hydrolase | - |
| L0998_RS03890 (L0998_03890) | comGA | 726555..727529 (+) | 975 | WP_054191886.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| L0998_RS03895 (L0998_03895) | comGB | 727501..728571 (+) | 1071 | WP_054190027.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| L0998_RS03900 (L0998_03900) | comGC | 728585..728896 (+) | 312 | WP_054190026.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| L0998_RS03905 (L0998_03905) | comGD | 728874..729320 (+) | 447 | WP_077446655.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| L0998_RS03910 (L0998_03910) | comGE | 729307..729606 (+) | 300 | WP_054190024.1 | hypothetical protein | Machinery gene |
| L0998_RS03915 (L0998_03915) | comGF | 729524..730021 (+) | 498 | WP_077446653.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| L0998_RS03920 (L0998_03920) | - | 730118..730264 (+) | 147 | WP_001789879.1 | hypothetical protein | - |
| L0998_RS03925 (L0998_03925) | - | 730254..730778 (+) | 525 | WP_054190023.1 | shikimate kinase | - |
| L0998_RS03930 (L0998_03930) | gcvT | 730937..732028 (+) | 1092 | WP_054190022.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| L0998_RS03935 (L0998_03935) | gcvPA | 732048..733394 (+) | 1347 | WP_054190021.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11329.38 Da Isoelectric Point: 8.5268
>NTDB_id=645392 L0998_RS03900 WP_054190026.1 728585..728896(+) (comGC) [Staphylococcus aureus strain SAUR_BFS12]
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIAEGFI
KEAQKTCKSGETITISNGEAVAN
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIAEGFI
KEAQKTCKSGETITISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=645392 L0998_RS03900 WP_054190026.1 728585..728896(+) (comGC) [Staphylococcus aureus strain SAUR_BFS12]
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGAGGGTTTCATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGAGGGTTTCATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
99.029 |
100 |
0.99 |
| comGC | Staphylococcus aureus N315 |
99.029 |
100 |
0.99 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus pneumoniae D39 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus pneumoniae R6 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus mitis SK321 |
50 |
83.495 |
0.417 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50 |
83.495 |
0.417 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
42.857 |
95.146 |
0.408 |
| comYC | Streptococcus suis isolate S10 |
50 |
75.728 |
0.379 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
42.857 |
88.35 |
0.379 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
46.341 |
79.612 |
0.369 |