Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | L0998_RS03895 | Genome accession | NZ_CP090876 |
| Coordinates | 727501..728571 (+) | Length | 356 a.a. |
| NCBI ID | WP_054190027.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SAUR_BFS12 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 722501..733571
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0998_RS03865 (L0998_03865) | - | 722924..724387 (+) | 1464 | WP_054190029.1 | rhomboid family protein | - |
| L0998_RS03870 (L0998_03870) | - | 724368..724571 (+) | 204 | WP_000087561.1 | YqgQ family protein | - |
| L0998_RS03875 (L0998_03875) | - | 724568..725554 (+) | 987 | WP_000161315.1 | ROK family glucokinase | - |
| L0998_RS03880 (L0998_03880) | - | 725554..725883 (+) | 330 | WP_001018871.1 | MTH1187 family thiamine-binding protein | - |
| L0998_RS03885 (L0998_03885) | - | 725880..726503 (+) | 624 | WP_054190028.1 | MBL fold metallo-hydrolase | - |
| L0998_RS03890 (L0998_03890) | comGA | 726555..727529 (+) | 975 | WP_054191886.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| L0998_RS03895 (L0998_03895) | comGB | 727501..728571 (+) | 1071 | WP_054190027.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| L0998_RS03900 (L0998_03900) | comGC | 728585..728896 (+) | 312 | WP_054190026.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| L0998_RS03905 (L0998_03905) | comGD | 728874..729320 (+) | 447 | WP_077446655.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| L0998_RS03910 (L0998_03910) | comGE | 729307..729606 (+) | 300 | WP_054190024.1 | hypothetical protein | Machinery gene |
| L0998_RS03915 (L0998_03915) | comGF | 729524..730021 (+) | 498 | WP_077446653.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| L0998_RS03920 (L0998_03920) | - | 730118..730264 (+) | 147 | WP_001789879.1 | hypothetical protein | - |
| L0998_RS03925 (L0998_03925) | - | 730254..730778 (+) | 525 | WP_054190023.1 | shikimate kinase | - |
| L0998_RS03930 (L0998_03930) | gcvT | 730937..732028 (+) | 1092 | WP_054190022.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| L0998_RS03935 (L0998_03935) | gcvPA | 732048..733394 (+) | 1347 | WP_054190021.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 41579.02 Da Isoelectric Point: 10.1371
>NTDB_id=645391 L0998_RS03895 WP_054190027.1 727501..728571(+) (comGB) [Staphylococcus aureus strain SAUR_BFS12]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLATTILSEISNGAPCNQILSLIG
YNDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSIFITSLPTIIVVMLIIVSMLAIIMKFIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKFLLTYSEMGYSLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVRQIEDKAIK
QTQFLQPILFFILGLFIVAIYLVIMLPMFQMMQSIK
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLATTILSEISNGAPCNQILSLIG
YNDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSIFITSLPTIIVVMLIIVSMLAIIMKFIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKFLLTYSEMGYSLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVRQIEDKAIK
QTQFLQPILFFILGLFIVAIYLVIMLPMFQMMQSIK
Nucleotide
Download Length: 1071 bp
>NTDB_id=645391 L0998_RS03895 WP_054190027.1 727501..728571(+) (comGB) [Staphylococcus aureus strain SAUR_BFS12]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGCTACCACCATTCTGAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT
TATAACGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTATTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTTATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTTATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTTTAGGTAAATTCTTATTAACTTATTCGGA
AATGGGATATAGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATAAAGTTTGTGCTGCAAGGTG
AAAAGAGAGGGAAACTAGAAGTAGAACTAAAGTTATATTCACAAATATTAGTGAGACAAATAGAGGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTTATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGCTACCACCATTCTGAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT
TATAACGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTATTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTTATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTTATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTTTAGGTAAATTCTTATTAACTTATTCGGA
AATGGGATATAGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATAAAGTTTGTGCTGCAAGGTG
AAAAGAGAGGGAAACTAGAAGTAGAACTAAAGTTATATTCACAAATATTAGTGAGACAAATAGAGGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTTATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
97.472 |
100 |
0.975 |
| comGB | Staphylococcus aureus N315 |
97.472 |
100 |
0.975 |