Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | L0999_RS10355 | Genome accession | NZ_CP090870 |
| Coordinates | 2048553..2048978 (+) | Length | 141 a.a. |
| NCBI ID | WP_015978401.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SAUR_BFS62 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2039312..2089027 | 2048553..2048978 | within | 0 |
Gene organization within MGE regions
Location: 2039312..2089027
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0999_RS10285 (L0999_10285) | rnr | 2039312..2041684 (+) | 2373 | WP_001050048.1 | ribonuclease R | - |
| L0999_RS10290 (L0999_10290) | smpB | 2041706..2042170 (+) | 465 | WP_001085183.1 | SsrA-binding protein SmpB | - |
| L0999_RS10300 (L0999_10300) | - | 2042682..2043731 (-) | 1050 | WP_000146086.1 | tyrosine-type recombinase/integrase | - |
| L0999_RS10305 (L0999_10305) | - | 2043793..2044722 (-) | 930 | WP_031925040.1 | DUF5067 domain-containing protein | - |
| L0999_RS10310 (L0999_10310) | - | 2044741..2045199 (-) | 459 | WP_031887091.1 | ImmA/IrrE family metallo-endopeptidase | - |
| L0999_RS10315 (L0999_10315) | - | 2045221..2045547 (-) | 327 | WP_000455972.1 | helix-turn-helix domain-containing protein | - |
| L0999_RS10320 (L0999_10320) | - | 2045710..2045919 (+) | 210 | WP_001114715.1 | helix-turn-helix transcriptional regulator | - |
| L0999_RS10325 (L0999_10325) | - | 2045958..2046671 (+) | 714 | WP_168756929.1 | BRO family protein | - |
| L0999_RS10330 (L0999_10330) | - | 2046684..2046893 (+) | 210 | WP_000455728.1 | hypothetical protein | - |
| L0999_RS10335 (L0999_10335) | - | 2046907..2047068 (+) | 162 | WP_000048126.1 | DUF1270 family protein | - |
| L0999_RS10340 (L0999_10340) | - | 2047160..2047420 (+) | 261 | WP_040968667.1 | DUF1108 family protein | - |
| L0999_RS10345 (L0999_10345) | - | 2047436..2047915 (+) | 480 | WP_000002516.1 | siphovirus Gp157 family protein | - |
| L0999_RS10350 (L0999_10350) | - | 2047915..2048553 (+) | 639 | WP_234863257.1 | ERF family protein | - |
| L0999_RS10355 (L0999_10355) | ssbA | 2048553..2048978 (+) | 426 | WP_015978401.1 | single-stranded DNA-binding protein | Machinery gene |
| L0999_RS10360 (L0999_10360) | - | 2048989..2049540 (+) | 552 | WP_103151619.1 | NUMOD4 domain-containing protein | - |
| L0999_RS10365 (L0999_10365) | - | 2049541..2050209 (+) | 669 | WP_103153105.1 | putative HNHc nuclease | - |
| L0999_RS10370 (L0999_10370) | - | 2050209..2050991 (+) | 783 | WP_017804645.1 | AP2 domain-containing protein | - |
| L0999_RS10375 (L0999_10375) | - | 2050963..2051766 (+) | 804 | WP_000504985.1 | phage replisome organizer N-terminal domain-containing protein | - |
| L0999_RS10380 (L0999_10380) | - | 2051776..2052549 (+) | 774 | WP_017804492.1 | ATP-binding protein | - |
| L0999_RS10385 (L0999_10385) | - | 2052543..2052701 (+) | 159 | WP_015997089.1 | hypothetical protein | - |
| L0999_RS10390 (L0999_10390) | - | 2052714..2052935 (+) | 222 | WP_001123695.1 | DUF3269 family protein | - |
| L0999_RS10395 (L0999_10395) | - | 2052946..2053350 (+) | 405 | WP_234863256.1 | DUF1064 domain-containing protein | - |
| L0999_RS10400 (L0999_10400) | - | 2053355..2053540 (+) | 186 | WP_001187266.1 | DUF3113 family protein | - |
| L0999_RS10405 (L0999_10405) | - | 2053541..2054158 (+) | 618 | WP_234863255.1 | SA1788 family PVL leukocidin-associated protein | - |
| L0999_RS10410 (L0999_10410) | - | 2054158..2054412 (+) | 255 | WP_031867833.1 | DUF3310 domain-containing protein | - |
| L0999_RS10415 (L0999_10415) | - | 2054418..2054660 (+) | 243 | WP_031911822.1 | SAV1978 family virulence-associated passenger protein | - |
| L0999_RS10420 (L0999_10420) | - | 2054674..2055081 (+) | 408 | WP_031867835.1 | hypothetical protein | - |
| L0999_RS10425 (L0999_10425) | - | 2055081..2055356 (+) | 276 | WP_162665214.1 | hypothetical protein | - |
| L0999_RS10430 (L0999_10430) | - | 2055349..2055597 (+) | 249 | WP_103151611.1 | DUF1024 family protein | - |
| L0999_RS10435 (L0999_10435) | - | 2055590..2056120 (+) | 531 | WP_000185662.1 | dUTPase | - |
| L0999_RS10440 (L0999_10440) | - | 2056157..2056444 (+) | 288 | WP_001613442.1 | DUF1381 domain-containing protein | - |
| L0999_RS10445 (L0999_10445) | - | 2056437..2056673 (+) | 237 | WP_000608278.1 | hypothetical protein | - |
| L0999_RS10450 (L0999_10450) | - | 2056663..2057052 (+) | 390 | WP_001662395.1 | hypothetical protein | - |
| L0999_RS10455 (L0999_10455) | rinB | 2057049..2057222 (+) | 174 | WP_103246442.1 | transcriptional activator RinB | - |
| L0999_RS10460 (L0999_10460) | - | 2057223..2057369 (+) | 147 | WP_000990005.1 | hypothetical protein | - |
| L0999_RS10465 (L0999_10465) | - | 2057393..2057815 (+) | 423 | WP_103147030.1 | RinA family phage transcriptional activator | - |
| L0999_RS10470 (L0999_10470) | - | 2058002..2058442 (+) | 441 | WP_001003271.1 | terminase small subunit | - |
| L0999_RS10475 (L0999_10475) | - | 2058429..2059706 (+) | 1278 | WP_183137797.1 | PBSX family phage terminase large subunit | - |
| L0999_RS10480 (L0999_10480) | - | 2059717..2061252 (+) | 1536 | WP_234863254.1 | phage portal protein | - |
| L0999_RS10485 (L0999_10485) | - | 2061259..2062254 (+) | 996 | WP_001133044.1 | minor capsid protein | - |
| L0999_RS10490 (L0999_10490) | - | 2062327..2062497 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| L0999_RS10495 (L0999_10495) | - | 2062525..2062612 (+) | 88 | Protein_2028 | hypothetical protein | - |
| L0999_RS10500 (L0999_10500) | - | 2062606..2063226 (+) | 621 | WP_000392151.1 | DUF4355 domain-containing protein | - |
| L0999_RS10505 (L0999_10505) | - | 2063240..2064214 (+) | 975 | WP_031866019.1 | phage major capsid protein | - |
| L0999_RS10510 (L0999_10510) | - | 2064236..2064523 (+) | 288 | WP_031786118.1 | hypothetical protein | - |
| L0999_RS10515 (L0999_10515) | - | 2064532..2064864 (+) | 333 | WP_053870257.1 | phage head-tail connector protein | - |
| L0999_RS10520 (L0999_10520) | - | 2064861..2065163 (+) | 303 | WP_031903213.1 | hypothetical protein | - |
| L0999_RS10525 (L0999_10525) | - | 2065163..2065510 (+) | 348 | WP_031925055.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| L0999_RS10530 (L0999_10530) | - | 2065522..2065905 (+) | 384 | WP_000188652.1 | hypothetical protein | - |
| L0999_RS10535 (L0999_10535) | - | 2065924..2066505 (+) | 582 | WP_176323837.1 | phage major tail protein, TP901-1 family | - |
| L0999_RS10540 (L0999_10540) | - | 2066568..2066933 (+) | 366 | WP_017804570.1 | tail assembly chaperone | - |
| L0999_RS10545 (L0999_10545) | - | 2066963..2067307 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| L0999_RS10550 (L0999_10550) | - | 2067324..2070788 (+) | 3465 | WP_234863253.1 | hypothetical protein | - |
| L0999_RS10555 (L0999_10555) | - | 2070801..2071748 (+) | 948 | WP_000350675.1 | phage tail family protein | - |
| L0999_RS10560 (L0999_10560) | - | 2071757..2073655 (+) | 1899 | WP_234863252.1 | SGNH/GDSL hydrolase family protein | - |
| L0999_RS10565 (L0999_10565) | - | 2073670..2075580 (+) | 1911 | WP_001836235.1 | hypothetical protein | - |
| L0999_RS10570 (L0999_10570) | - | 2075580..2077403 (+) | 1824 | WP_183137796.1 | phage baseplate upper protein | - |
| L0999_RS10575 (L0999_10575) | - | 2077403..2077780 (+) | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| L0999_RS10580 (L0999_10580) | - | 2077784..2077957 (+) | 174 | WP_000782200.1 | XkdX family protein | - |
| L0999_RS10585 (L0999_10585) | - | 2077997..2078296 (+) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| L0999_RS10590 (L0999_10590) | - | 2078433..2080331 (+) | 1899 | WP_234873513.1 | glucosaminidase domain-containing protein | - |
| L0999_RS10595 (L0999_10595) | - | 2080344..2081516 (+) | 1173 | WP_031925018.1 | BppU family phage baseplate upper protein | - |
| L0999_RS10600 (L0999_10600) | - | 2081522..2081917 (+) | 396 | WP_015978410.1 | hypothetical protein | - |
| L0999_RS10605 (L0999_10605) | - | 2081973..2082410 (+) | 438 | WP_000354132.1 | phage holin | - |
| L0999_RS10610 (L0999_10610) | - | 2082391..2083836 (+) | 1446 | WP_061745622.1 | SH3 domain-containing protein | - |
| L0999_RS10615 (L0999_10615) | - | 2084365..2084571 (+) | 207 | WP_000125170.1 | hypothetical protein | - |
| L0999_RS10620 (L0999_10620) | - | 2084585..2084785 (+) | 201 | WP_000498230.1 | hypothetical protein | - |
| L0999_RS10625 (L0999_10625) | - | 2085834..2086157 (-) | 324 | WP_001058299.1 | hypothetical protein | - |
| L0999_RS10630 (L0999_10630) | - | 2086173..2086319 (-) | 147 | WP_001057759.1 | hypothetical protein | - |
| L0999_RS10635 (L0999_10635) | - | 2086511..2087239 (-) | 729 | WP_000757397.1 | DUF5067 domain-containing protein | - |
| L0999_RS10640 (L0999_10640) | - | 2087674..2087829 (+) | 156 | WP_001790158.1 | hypothetical protein | - |
| L0999_RS10645 (L0999_10645) | - | 2087837..2088358 (+) | 522 | WP_234863251.1 | hypothetical protein | - |
| L0999_RS10650 (L0999_10650) | - | 2088497..2089027 (+) | 531 | WP_001167158.1 | GNAT family N-acetyltransferase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15947.45 Da Isoelectric Point: 5.8790
>NTDB_id=645319 L0999_RS10355 WP_015978401.1 2048553..2048978(+) (ssbA) [Staphylococcus aureus strain SAUR_BFS62]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=645319 L0999_RS10355 WP_015978401.1 2048553..2048978(+) (ssbA) [Staphylococcus aureus strain SAUR_BFS62]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
74.576 |
83.688 |
0.624 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.603 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.553 |
100 |
0.426 |
| ssbA | Streptococcus mutans UA159 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.915 |
83.688 |
0.376 |