Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L0994_RS02585 Genome accession   NZ_CP090847
Coordinates   511236..512465 (-) Length   409 a.a.
NCBI ID   WP_016768204.1    Uniprot ID   A0A7Z1S1U0
Organism   Vibrio cyclitrophicus strain WXL032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 506236..517465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0994_RS02545 (L0994_02535) rpsP 506344..506592 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  L0994_RS02550 (L0994_02540) rimM 506617..507171 (+) 555 WP_016768202.1 ribosome maturation factor RimM -
  L0994_RS02555 (L0994_02545) trmD 507198..507938 (+) 741 WP_010435912.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L0994_RS02560 (L0994_02550) rplS 507998..508351 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  L0994_RS02565 (L0994_02555) yacG 508637..508834 (-) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  L0994_RS02570 (L0994_02560) zapD 508916..509656 (-) 741 WP_010435917.1 cell division protein ZapD -
  L0994_RS02575 (L0994_02565) coaE 509683..510297 (-) 615 WP_010435920.1 dephospho-CoA kinase -
  L0994_RS02580 (L0994_02570) pilD 510300..511169 (-) 870 WP_373929936.1 A24 family peptidase Machinery gene
  L0994_RS02585 (L0994_02575) pilC 511236..512465 (-) 1230 WP_016768204.1 type II secretion system F family protein Machinery gene
  L0994_RS02590 (L0994_02580) pilB 512480..514165 (-) 1686 WP_065100288.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L0994_RS02595 (L0994_02585) pilA 514165..514638 (-) 474 WP_016790756.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  L0994_RS02600 (L0994_02590) nadC 514892..515782 (-) 891 WP_004738163.1 carboxylating nicotinate-nucleotide diphosphorylase -
  L0994_RS02605 (L0994_02595) ampD 515866..516465 (+) 600 WP_016790757.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45165.12 Da        Isoelectric Point: 10.1000

>NTDB_id=645212 L0994_RS02585 WP_016768204.1 511236..512465(-) (pilC) [Vibrio cyclitrophicus strain WXL032]
MSSKSKQSQLKNYHWKGINSSGKKMSGQSLALTELEVREKLKEQHIQIKKIKKKSISAITRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLDLSHWMQAYSFYTALGIGATSL
VVHQLCQRSYSIRLSASRLVLRFPVLGGVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGSLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=645212 L0994_RS02585 WP_016768204.1 511236..512465(-) (pilC) [Vibrio cyclitrophicus strain WXL032]
ATGAGTAGTAAAAGCAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATCAATAGTTCTGGCAAGAAAATGTCTGG
GCAGAGCTTAGCGCTCACCGAATTAGAAGTGCGAGAGAAGCTCAAAGAGCAACATATCCAAATTAAGAAAATCAAAAAGA
AAAGTATCTCCGCAATCACTCGTTTAACCCATAGAGTCAAAGCCAAAGACATCACTATTTTGACGAGACAGCTTGCTACC
ATGCTCGCTACGGGTGTGCCTATCGTGCAAGCCATAAAGTTGGTATCAGATAATCATCGTAAAGCAGAAATGAAATCTAT
TTTATCGCATATCTGCAAAGGTGTAGAAGCCGGAACGCCAATCTCAAAAGCAATGAGAACCGCAAGCCGCCACTTTGACG
ATCTCTACACCGACCTAGTCGCCACCGGAGAGCTTTCCGGCAACCTCGCACAAGTCTTTGAACGCTTAGCGACCTATCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCGCTTATCTATCCAGCAATGGTGGTCACGGTTGCGCTGACCGT
CTCCTATCTCATGCTCACCATGGTCATCCCAGAGTTTGAATCGATGTTTTCAGGCTTTGGTGCCGATCTTCCCTGGTTCA
CCCAACAAGTCCTCGACCTGTCTCATTGGATGCAAGCTTACAGTTTTTATACCGCCCTAGGCATCGGGGCTACCAGCCTG
GTTGTTCATCAACTGTGCCAACGTTCTTACTCGATTCGACTATCAGCCAGCCGCTTAGTGTTACGCTTTCCTGTACTAGG
TGGCGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGTTCTGGTATTCCGATTCTAA
TGAGCCTCAAAACTACAGCCAAAACCGCAGGCAGTCTGCATTATGAATCTGCGATCATCGAAGTACACCGAGAAACAGCC
GCGGGTATGCCGATGTATATTGCAATGCGCAATACCAATGCCTTCCCTGAAATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAGTTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACAGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z1S1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79.5

97.8

0.778
  pilC Vibrio campbellii strain DS40M4

73.775

99.756

0.736
  pilC Acinetobacter baylyi ADP1

42.054

100

0.421
  pilC Legionella pneumophila strain ERS1305867

42.145

98.044

0.413
  pilC Acinetobacter baumannii D1279779

41.584

98.778

0.411
  pilC Pseudomonas stutzeri DSM 10701

40.347

98.778

0.399
  pilG Neisseria gonorrhoeae MS11

40.05

98.289

0.394
  pilG Neisseria meningitidis 44/76-A

39.801

98.289

0.391