Detailed information NTG0645211

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L0994_RS02580
• Genome accession: NZ_CP090847
• Coordinates: 510300..511169 (-)
• Length: 289 a.a.
• NCBI ID: WP_373929936.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain WXL032
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 505300..516169

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0994_RS02545 (L0994_02535)	rpsP	506344..506592 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
L0994_RS02550 (L0994_02540)	rimM	506617..507171 (+)	555	WP_016768202.1	ribosome maturation factor RimM	-
L0994_RS02555 (L0994_02545)	trmD	507198..507938 (+)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
L0994_RS02560 (L0994_02550)	rplS	507998..508351 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
L0994_RS02565 (L0994_02555)	yacG	508637..508834 (-)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
L0994_RS02570 (L0994_02560)	zapD	508916..509656 (-)	741	WP_010435917.1	cell division protein ZapD	-
L0994_RS02575 (L0994_02565)	coaE	509683..510297 (-)	615	WP_010435920.1	dephospho-CoA kinase	-
L0994_RS02580 (L0994_02570)	pilD	510300..511169 (-)	870	WP_373929936.1	A24 family peptidase	Machinery gene
L0994_RS02585 (L0994_02575)	pilC	511236..512465 (-)	1230	WP_016768204.1	type II secretion system F family protein	Machinery gene
L0994_RS02590 (L0994_02580)	pilB	512480..514165 (-)	1686	WP_065100288.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L0994_RS02595 (L0994_02585)	pilA	514165..514638 (-)	474	WP_016790756.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
L0994_RS02600 (L0994_02590)	nadC	514892..515782 (-)	891	WP_004738163.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32593.76 Da
• Isoelectric Point: 7.9444

>NTDB_id=645211 L0994_RS02580 WP_373929936.1 510300..511169(-) (pilD) [Vibrio cyclitrophicus strain WXL032]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRAI
DNIPVLSWLFLKGKCRSCTNPISARYPLVEQLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=645211 L0994_RS02580 WP_373929936.1 510300..511169(-) (pilD) [Vibrio cyclitrophicus strain WXL032]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAAGGAAAGTTTAATCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTGAGAGCAATC
GACAACATCCCTGTATTAAGCTGGTTATTCCTAAAAGGTAAGTGCCGCAGTTGTACTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACAGCTTACAGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTAGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.356	100	0.734
pilD	Vibrio cholerae strain A1552	68.75	99.654	0.685
pilD	Acinetobacter nosocomialis M2	50.936	92.388	0.471
pilD	Acinetobacter baumannii D1279779	50.562	92.388	0.467
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436