Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OIO43_RS01600 Genome accession   NZ_CP107599
Coordinates   341430..341891 (+) Length   153 a.a.
NCBI ID   WP_000993724.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326584     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336430..346891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS01580 (OIO43_01580) - 337819..338706 (+) 888 WP_001017327.1 metal-dependent hydrolase -
  OIO43_RS01585 (OIO43_01585) - 338837..339427 (+) 591 WP_000846931.1 LemA family protein -
  OIO43_RS01590 (OIO43_01590) - 339449..340531 (+) 1083 WP_001246382.1 YgcG family protein -
  OIO43_RS01595 (OIO43_01595) - 340525..341085 (+) 561 WP_000258944.1 TPM domain-containing protein -
  OIO43_RS01600 (OIO43_01600) pilA 341430..341891 (+) 462 WP_000993724.1 pilin Machinery gene
  OIO43_RS01605 (OIO43_01605) - 342025..343650 (+) 1626 Protein_306 Wzy polymerase domain-containing protein -
  OIO43_RS01615 (OIO43_01615) - 344866..345687 (+) 822 WP_001046004.1 OXA-23 family carbapenem-hydrolyzing class D beta-lactamase OXA-23 -
  OIO43_RS01620 (OIO43_01620) - 345792..346457 (-) 666 Protein_309 ATP-binding protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 15361.44 Da        Isoelectric Point: 6.1601

>NTDB_id=644297 OIO43_RS01600 WP_000993724.1 341430..341891(+) (pilA) [Acinetobacter baumannii strain 1326584]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQKYTARSQITAALAEISPGKTQFELALSEGTAVTTPANIGLNATTNNCSA
VTATSTAGTTGTITCTLRGSATITSGVITLTRTAEATDASGVTTDTGGWACSIKNNGSSDITAAIAPKSCTVS

Nucleotide


Download         Length: 462 bp        

>NTDB_id=644297 OIO43_RS01600 WP_000993724.1 341430..341891(+) (pilA) [Acinetobacter baumannii strain 1326584]
ATGAATGCACAAAAAGGTTTTACGTTAATTGAACTCATGATCGTGGTTGCCATTATCGGTATCTTGGCAGCAATTGCGAT
TCCACAATATCAAAAATATACTGCACGTTCTCAAATCACAGCGGCATTAGCCGAGATTAGCCCGGGGAAAACTCAGTTTG
AATTGGCTTTATCAGAAGGAACAGCTGTTACAACTCCTGCTAATATTGGTTTAAATGCAACGACTAATAACTGTAGTGCT
GTTACAGCAACCTCAACTGCAGGTACTACAGGGACTATTACTTGTACCTTAAGGGGGTCTGCAACAATCACTAGCGGGGT
GATTACATTAACTCGTACTGCTGAAGCTACAGATGCTTCTGGAGTAACTACTGATACTGGTGGTTGGGCATGTTCAATTA
AAAACAATGGTTCATCAGATATTACAGCAGCCATTGCTCCGAAATCATGTACAGTTTCTTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

43.636

100

0.471
  pilA Acinetobacter baumannii strain A118

45.455

100

0.458
  pilA/pilAI Pseudomonas stutzeri DSM 10701

44.156

100

0.444
  pilA/pilAII Pseudomonas stutzeri DSM 10701

44.079

99.346

0.438
  pilA Vibrio cholerae C6706

40.127

100

0.412
  pilA Vibrio cholerae strain A1552

40.127

100

0.412
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40.127

100

0.412
  pilA2 Legionella pneumophila str. Paris

41.176

100

0.412
  pilA2 Legionella pneumophila strain ERS1305867

40.523

100

0.405
  pilA Ralstonia pseudosolanacearum GMI1000

37.349

100

0.405